Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9379 | 3' | -51.6 | NC_002512.2 | + | 218123 | 0.68 | 0.989722 |
Target: 5'- gUC-GCUCGgguagaaCACGucGUCGUCGUCGUCg -3' miRNA: 3'- aAGuUGGGCa------GUGC--UAGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 3177 | 0.68 | 0.986821 |
Target: 5'- cUCuACUCGuuUCGCGucgaCGUCGUCGUCg -3' miRNA: 3'- aAGuUGGGC--AGUGCua--GUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 226408 | 0.68 | 0.986821 |
Target: 5'- --gGACCCGUCGCG-UCcgCGUC-UCc -3' miRNA: 3'- aagUUGGGCAGUGCuAGuaGCAGcAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 179487 | 0.68 | 0.985153 |
Target: 5'- cUUCGGCggcgUCGUCGCcAUCGUCGUCGg- -3' miRNA: 3'- -AAGUUG----GGCAGUGcUAGUAGCAGCag -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 201691 | 0.69 | 0.978951 |
Target: 5'- -gCGGCCgCGUCuggugcgggaucgGCGGcggCGUCGUCGUCg -3' miRNA: 3'- aaGUUGG-GCAG-------------UGCUa--GUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 107218 | 0.69 | 0.971578 |
Target: 5'- -gCGGCCgGggagcCGCGGUCAcCGUCGUCc -3' miRNA: 3'- aaGUUGGgCa----GUGCUAGUaGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 156183 | 0.69 | 0.96865 |
Target: 5'- -gCGACCagcUCAUGGUCAUggaCGUCGUCa -3' miRNA: 3'- aaGUUGGgc-AGUGCUAGUA---GCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 99620 | 0.69 | 0.96865 |
Target: 5'- ---cGCUCGUCGCGGUCGUCGcCcUCg -3' miRNA: 3'- aaguUGGGCAGUGCUAGUAGCaGcAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 209888 | 0.7 | 0.958595 |
Target: 5'- -gUggUCgGUCGCGGggagcaggggcUCAUCGUCGUCu -3' miRNA: 3'- aaGuuGGgCAGUGCU-----------AGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 179670 | 0.71 | 0.946522 |
Target: 5'- gUCAGCgCCaggugGUaCACGAUCGUCG-CGUCg -3' miRNA: 3'- aAGUUG-GG-----CA-GUGCUAGUAGCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 96101 | 0.72 | 0.915987 |
Target: 5'- gUCGucCCCGcCGCcgccGUCGUCGUCGUCg -3' miRNA: 3'- aAGUu-GGGCaGUGc---UAGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 128050 | 0.72 | 0.897489 |
Target: 5'- -aCGGCCCcgacgGUCGCGG-CGUCGUCGUg -3' miRNA: 3'- aaGUUGGG-----CAGUGCUaGUAGCAGCAg -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 117984 | 0.74 | 0.846401 |
Target: 5'- -aCAACCCG-CGCGGcCGcUCGUCGUCc -3' miRNA: 3'- aaGUUGGGCaGUGCUaGU-AGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 215363 | 0.75 | 0.803936 |
Target: 5'- gUCGACuCCGUCGCGcgCuUCGcCGUCg -3' miRNA: 3'- aAGUUG-GGCAGUGCuaGuAGCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 178550 | 0.75 | 0.79494 |
Target: 5'- aUCgAGCCCGUCACGAUCcgGUUGUgGUg -3' miRNA: 3'- aAG-UUGGGCAGUGCUAG--UAGCAgCAg -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 191775 | 0.77 | 0.667848 |
Target: 5'- cUCAuCCuCGUCAUcAUCAUCGUCGUCu -3' miRNA: 3'- aAGUuGG-GCAGUGcUAGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 193130 | 0.78 | 0.657614 |
Target: 5'- -cCGGCCCGacgUCACGGUCGUCcUCGUCc -3' miRNA: 3'- aaGUUGGGC---AGUGCUAGUAGcAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 108059 | 0.8 | 0.515694 |
Target: 5'- cUCcccCCCGUCcggccgacgGCGAUCGUCGUCGUCg -3' miRNA: 3'- aAGuu-GGGCAG---------UGCUAGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 152061 | 0.81 | 0.496243 |
Target: 5'- --aGACCgGUCGCGGUCAUCGcCGUCc -3' miRNA: 3'- aagUUGGgCAGUGCUAGUAGCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 126838 | 0.83 | 0.404661 |
Target: 5'- gUCGcGCUCGUCGCGGUCGUCGcCGUCg -3' miRNA: 3'- aAGU-UGGGCAGUGCUAGUAGCaGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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