miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9379 5' -54.2 NC_002512.2 + 3476 0.67 0.964373
Target:  5'- --cUCGCCAucucCAUCGUCGCCGcCGAc -3'
miRNA:   3'- gccGGCGGUua--GUAGUAGUGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 6046 0.66 0.980284
Target:  5'- cCGGCCucucuGCCAAUCGUCAgaauCUGgCGAc -3'
miRNA:   3'- -GCCGG-----CGGUUAGUAGUagu-GGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 7614 0.72 0.806609
Target:  5'- aCGGUCGCgGcgCGUUugGUCACCGUgGAg -3'
miRNA:   3'- -GCCGGCGgUuaGUAG--UAGUGGCAgCU- -5'
9379 5' -54.2 NC_002512.2 + 7888 0.71 0.839917
Target:  5'- gCGGCCaCCGuAUCAUCAcguaucguaugUCGCCgGUCGAa -3'
miRNA:   3'- -GCCGGcGGU-UAGUAGU-----------AGUGG-CAGCU- -5'
9379 5' -54.2 NC_002512.2 + 22076 0.68 0.949742
Target:  5'- gGGUCGacuguagCGAUCGUCAUUAUCGUCa- -3'
miRNA:   3'- gCCGGCg------GUUAGUAGUAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 33082 0.69 0.936458
Target:  5'- cCGGCgCGCgCGGUCAUCGggaccauaucUCGCUGUCc- -3'
miRNA:   3'- -GCCG-GCG-GUUAGUAGU----------AGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 35143 0.66 0.980284
Target:  5'- cCGGCCGCaaGAUCA-CAUCguGCCGUUu- -3'
miRNA:   3'- -GCCGGCGg-UUAGUaGUAG--UGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 76622 0.71 0.855515
Target:  5'- gGGCCGCC-AUCG-CAU--CCGUCGAu -3'
miRNA:   3'- gCCGGCGGuUAGUaGUAguGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 77114 0.76 0.614496
Target:  5'- aGGcCCGgCGGUCAUCGauagagaccUCGCCGUCGGg -3'
miRNA:   3'- gCC-GGCgGUUAGUAGU---------AGUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 77346 0.69 0.926466
Target:  5'- aCGGuUCGCCu-UCGUCGgaaCGCCGUCGc -3'
miRNA:   3'- -GCC-GGCGGuuAGUAGUa--GUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 87778 0.66 0.98745
Target:  5'- cCGGCCGCCGAcggGUCggUACCGgguccgcguUCGGu -3'
miRNA:   3'- -GCCGGCGGUUag-UAGuaGUGGC---------AGCU- -5'
9379 5' -54.2 NC_002512.2 + 88938 0.66 0.984173
Target:  5'- cCGaGCCGCCccccuUCcgccUCGUCGCCGUCn- -3'
miRNA:   3'- -GC-CGGCGGuu---AGu---AGUAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 88970 0.74 0.733262
Target:  5'- cCGaGCCGCCg--CGUCGUCcCCGUCGu -3'
miRNA:   3'- -GC-CGGCGGuuaGUAGUAGuGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 93688 0.66 0.978092
Target:  5'- aGGCCGCCGG-CGUCGacgcgaUC-CCGgCGAc -3'
miRNA:   3'- gCCGGCGGUUaGUAGU------AGuGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 96109 0.76 0.614496
Target:  5'- -cGCCGCCGccGUCGUCGUCGUCGUCGu -3'
miRNA:   3'- gcCGGCGGU--UAGUAGUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 96146 0.75 0.674483
Target:  5'- gCGGgCGCUcuccUCGUCGUCGCUGUCGGu -3'
miRNA:   3'- -GCCgGCGGuu--AGUAGUAGUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 99612 0.66 0.984173
Target:  5'- gGGCC-CCGcgC-UCGUCGCgGUCGu -3'
miRNA:   3'- gCCGGcGGUuaGuAGUAGUGgCAGCu -5'
9379 5' -54.2 NC_002512.2 + 102137 0.71 0.855515
Target:  5'- cCGGCCGgCGAcuacgCAUCAUCACCuucCGAu -3'
miRNA:   3'- -GCCGGCgGUUa----GUAGUAGUGGca-GCU- -5'
9379 5' -54.2 NC_002512.2 + 103408 0.66 0.985884
Target:  5'- gGGCCaCgAAcUCGUCGaagaCGCCGUCGAa -3'
miRNA:   3'- gCCGGcGgUU-AGUAGUa---GUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 106636 0.66 0.982309
Target:  5'- gCGG-CGCCGGUCGUCGagcUCGaagaaGUCGAg -3'
miRNA:   3'- -GCCgGCGGUUAGUAGU---AGUgg---CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.