miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9379 5' -54.2 NC_002512.2 + 185351 0.8 0.424777
Target:  5'- uGGCCGCCGc----CAUCGCCGUCGAc -3'
miRNA:   3'- gCCGGCGGUuaguaGUAGUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 124655 0.79 0.442304
Target:  5'- aGGCCGCUGAUCGUCAcccUCACCGcCa- -3'
miRNA:   3'- gCCGGCGGUUAGUAGU---AGUGGCaGcu -5'
9379 5' -54.2 NC_002512.2 + 108070 0.77 0.574655
Target:  5'- cCGGCCGacggCGAUCGUCGUCGUCGUCGu -3'
miRNA:   3'- -GCCGGCg---GUUAGUAGUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 200105 0.76 0.584573
Target:  5'- gGGUCGCCGGgguacuUCAgCAUCGCCGUCGc -3'
miRNA:   3'- gCCGGCGGUU------AGUaGUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 77114 0.76 0.614496
Target:  5'- aGGcCCGgCGGUCAUCGauagagaccUCGCCGUCGGg -3'
miRNA:   3'- gCC-GGCgGUUAGUAGU---------AGUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 96109 0.76 0.614496
Target:  5'- -cGCCGCCGccGUCGUCGUCGUCGUCGu -3'
miRNA:   3'- gcCGGCGGU--UAGUAGUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 143525 0.76 0.634519
Target:  5'- gGGCgCGCCuggCGgccUCGUCGCCGUCGGc -3'
miRNA:   3'- gCCG-GCGGuuaGU---AGUAGUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 126459 0.75 0.654535
Target:  5'- gCGGCCGCCuuguucgccGUCGUCGUCG-CGUCGc -3'
miRNA:   3'- -GCCGGCGGu--------UAGUAGUAGUgGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 96146 0.75 0.674483
Target:  5'- gCGGgCGCUcuccUCGUCGUCGCUGUCGGu -3'
miRNA:   3'- -GCCgGCGGuu--AGUAGUAGUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 181430 0.75 0.684411
Target:  5'- uGGCCGUCAGcugCGggAUCACCGUCGu -3'
miRNA:   3'- gCCGGCGGUUa--GUagUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 164377 0.74 0.723625
Target:  5'- -cGCCGCCAgcagcaggccGUCAUgCGUC-CCGUCGAg -3'
miRNA:   3'- gcCGGCGGU----------UAGUA-GUAGuGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 88970 0.74 0.733262
Target:  5'- cCGaGCCGCCg--CGUCGUCcCCGUCGu -3'
miRNA:   3'- -GC-CGGCGGuuaGUAGUAGuGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 142921 0.74 0.734221
Target:  5'- aCGGCCGCUucgucgaccgacagcGUCAcCAUCGCCGUCu- -3'
miRNA:   3'- -GCCGGCGGu--------------UAGUaGUAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 112867 0.73 0.739958
Target:  5'- cCGGCCGCCGAUgAUCuugcgCccgcccugcgugcgGCCGUCGGc -3'
miRNA:   3'- -GCCGGCGGUUAgUAGua---G--------------UGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 191758 0.73 0.777286
Target:  5'- uGGCCGUCcucGucgugcucauccucGUCAUCAUCAUCGUCGu -3'
miRNA:   3'- gCCGGCGG---U--------------UAGUAGUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 189620 0.73 0.780013
Target:  5'- gCGGCCGCacg-CgAUCGUCGCgGUCGGc -3'
miRNA:   3'- -GCCGGCGguuaG-UAGUAGUGgCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 7614 0.72 0.806609
Target:  5'- aCGGUCGCgGcgCGUUugGUCACCGUgGAg -3'
miRNA:   3'- -GCCGGCGgUuaGUAG--UAGUGGCAgCU- -5'
9379 5' -54.2 NC_002512.2 + 217795 0.72 0.806609
Target:  5'- cCGGCUgGCgGAUCggCGUCGCCGUCc- -3'
miRNA:   3'- -GCCGG-CGgUUAGuaGUAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 211907 0.72 0.815182
Target:  5'- gGGCUGCCg--CGUCGUCGagCGUCGGg -3'
miRNA:   3'- gCCGGCGGuuaGUAGUAGUg-GCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 138982 0.72 0.815182
Target:  5'- gCGGCCGCCAGUCcggcCGUC-CCGgaCGAu -3'
miRNA:   3'- -GCCGGCGGUUAGua--GUAGuGGCa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.