miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9379 5' -54.2 NC_002512.2 + 164317 0.72 0.831844
Target:  5'- gGGaCCGUgAccAUCAUCAUCAUCGUCa- -3'
miRNA:   3'- gCC-GGCGgU--UAGUAGUAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 7888 0.71 0.839917
Target:  5'- gCGGCCaCCGuAUCAUCAcguaucguaugUCGCCgGUCGAa -3'
miRNA:   3'- -GCCGGcGGU-UAGUAGU-----------AGUGG-CAGCU- -5'
9379 5' -54.2 NC_002512.2 + 120166 0.71 0.839917
Target:  5'- cCGGCCGCgcuuccCGAUCAgCAUC-CUGUCGGu -3'
miRNA:   3'- -GCCGGCG------GUUAGUaGUAGuGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 132520 0.71 0.84781
Target:  5'- cCGGCCGCCGcgGUCcccgcuccgCGggcggCGCCGUCGGc -3'
miRNA:   3'- -GCCGGCGGU--UAGua-------GUa----GUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 141517 0.71 0.855515
Target:  5'- uGGgCGCCuc-CGUCGUCACCGaacacUCGAa -3'
miRNA:   3'- gCCgGCGGuuaGUAGUAGUGGC-----AGCU- -5'
9379 5' -54.2 NC_002512.2 + 102137 0.71 0.855515
Target:  5'- cCGGCCGgCGAcuacgCAUCAUCACCuucCGAu -3'
miRNA:   3'- -GCCGGCgGUUa----GUAGUAGUGGca-GCU- -5'
9379 5' -54.2 NC_002512.2 + 76622 0.71 0.855515
Target:  5'- gGGCCGCC-AUCG-CAU--CCGUCGAu -3'
miRNA:   3'- gCCGGCGGuUAGUaGUAguGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 129655 0.71 0.870339
Target:  5'- gCGGUCGCCGccCGUCGaCGCCGccUCGAc -3'
miRNA:   3'- -GCCGGCGGUuaGUAGUaGUGGC--AGCU- -5'
9379 5' -54.2 NC_002512.2 + 184436 0.71 0.870339
Target:  5'- uCGGCCGCCGccggCGUCGgacagggagUCGCCG-CGGc -3'
miRNA:   3'- -GCCGGCGGUua--GUAGU---------AGUGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 152686 0.71 0.877447
Target:  5'- cCGGCgGCCGGUC-UCGUCGCguccccgGUCGGg -3'
miRNA:   3'- -GCCGgCGGUUAGuAGUAGUGg------CAGCU- -5'
9379 5' -54.2 NC_002512.2 + 210915 0.71 0.877447
Target:  5'- cCGGCUcuCCGG-CAUCAUCGCCG-CGAu -3'
miRNA:   3'- -GCCGGc-GGUUaGUAGUAGUGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 176491 0.7 0.889047
Target:  5'- gCGGCCGCCAggaagcccGUCGUCcAUUccagcgcccgcuugGCCGUCa- -3'
miRNA:   3'- -GCCGGCGGU--------UAGUAG-UAG--------------UGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 207688 0.7 0.903127
Target:  5'- cCGGCCGaagcgcuCCGucAUCGUCAUCGCCaUCGc -3'
miRNA:   3'- -GCCGGC-------GGU--UAGUAGUAGUGGcAGCu -5'
9379 5' -54.2 NC_002512.2 + 225456 0.7 0.903741
Target:  5'- cCGGCacccCGCCGGUCuaccagCAgcCGCCGUCGAc -3'
miRNA:   3'- -GCCG----GCGGUUAGua----GUa-GUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 189238 0.7 0.903741
Target:  5'- -cGUCGCCGucgCGgaCGUCACCGUCGGg -3'
miRNA:   3'- gcCGGCGGUua-GUa-GUAGUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 163903 0.69 0.915558
Target:  5'- -aGCCGCaaGAUCuUCAUCACCGaCGAg -3'
miRNA:   3'- gcCGGCGg-UUAGuAGUAGUGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 224891 0.69 0.915558
Target:  5'- cCGGCCGCCu-UCGaCccguUCGCCGUCu- -3'
miRNA:   3'- -GCCGGCGGuuAGUaGu---AGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 175542 0.69 0.921127
Target:  5'- uGGCCG-CGAUCGaggCgAUCACCGUCa- -3'
miRNA:   3'- gCCGGCgGUUAGUa--G-UAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 109121 0.69 0.926466
Target:  5'- aCGGCCGCCGA--GUCca-GCaCGUCGGa -3'
miRNA:   3'- -GCCGGCGGUUagUAGuagUG-GCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 151265 0.69 0.926466
Target:  5'- uCGGCCGUgAGUCAUCcaagauggCGCCGgaCGAa -3'
miRNA:   3'- -GCCGGCGgUUAGUAGua------GUGGCa-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.