miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9379 5' -54.2 NC_002512.2 + 202089 0.66 0.980284
Target:  5'- gGGgCGCCGGUCAccUCGUCcgACCG-CGu -3'
miRNA:   3'- gCCgGCGGUUAGU--AGUAG--UGGCaGCu -5'
9379 5' -54.2 NC_002512.2 + 202142 0.66 0.980284
Target:  5'- uCGGCCGCCGccgcggggcggGUgGUCGUUcCCGUgGu -3'
miRNA:   3'- -GCCGGCGGU-----------UAgUAGUAGuGGCAgCu -5'
9379 5' -54.2 NC_002512.2 + 215455 0.66 0.980284
Target:  5'- cCGGgaGCgGGUCAUCGcCGgCGUCGAc -3'
miRNA:   3'- -GCCggCGgUUAGUAGUaGUgGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 93688 0.66 0.978092
Target:  5'- aGGCCGCCGG-CGUCGacgcgaUC-CCGgCGAc -3'
miRNA:   3'- gCCGGCGGUUaGUAGU------AGuGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 137968 0.66 0.978092
Target:  5'- uCGGCCGCCGA-CggCG-CGCCGcCGc -3'
miRNA:   3'- -GCCGGCGGUUaGuaGUaGUGGCaGCu -5'
9379 5' -54.2 NC_002512.2 + 183963 0.66 0.978092
Target:  5'- -cGCgCGCuCGggCGUCGUCGCCuGUCGGg -3'
miRNA:   3'- gcCG-GCG-GUuaGUAGUAGUGG-CAGCU- -5'
9379 5' -54.2 NC_002512.2 + 206626 0.67 0.976693
Target:  5'- aGGCCGCguacgucgUGAUCAUCugcccguguucgccgAUCGCCGUgCGGa -3'
miRNA:   3'- gCCGGCG--------GUUAGUAG---------------UAGUGGCA-GCU- -5'
9379 5' -54.2 NC_002512.2 + 124544 0.67 0.975724
Target:  5'- aCGG-CGCUggUCAUCGaCACCGccuacUCGGc -3'
miRNA:   3'- -GCCgGCGGuuAGUAGUaGUGGC-----AGCU- -5'
9379 5' -54.2 NC_002512.2 + 188060 0.67 0.975724
Target:  5'- uCGGCCugcguccacaGCCAGgaCAUCGUCGuCCG-CGAg -3'
miRNA:   3'- -GCCGG----------CGGUUa-GUAGUAGU-GGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 182110 0.67 0.973175
Target:  5'- -uGUCGCCGAUCGUCG-CGCagaaGUCGu -3'
miRNA:   3'- gcCGGCGGUUAGUAGUaGUGg---CAGCu -5'
9379 5' -54.2 NC_002512.2 + 197621 0.67 0.973175
Target:  5'- gGGCCGCCuauuUCG--AUCACCGgcaGAu -3'
miRNA:   3'- gCCGGCGGuu--AGUagUAGUGGCag-CU- -5'
9379 5' -54.2 NC_002512.2 + 107213 0.67 0.973175
Target:  5'- gGGCCgcgGCCGGggagCcgCgGUCACCGUCGu -3'
miRNA:   3'- gCCGG---CGGUUa---GuaG-UAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 185550 0.67 0.973175
Target:  5'- cCGGCC-CCg--CggCGUgGCCGUCGAg -3'
miRNA:   3'- -GCCGGcGGuuaGuaGUAgUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 218121 0.67 0.973175
Target:  5'- gGGUCGCuCGgguagaacacGUCGUCGUCGUCGUCGc -3'
miRNA:   3'- gCCGGCG-GU----------UAGUAGUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 152064 0.67 0.970437
Target:  5'- cCGGUCGCg----GUCAUCGCCGUCc- -3'
miRNA:   3'- -GCCGGCGguuagUAGUAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 218386 0.67 0.970437
Target:  5'- gGGCCaggGCC--UCGUCGUCcucuCCGUCGu -3'
miRNA:   3'- gCCGG---CGGuuAGUAGUAGu---GGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 156904 0.67 0.970437
Target:  5'- uGGCCGCaGAUCccCAagGCCGUCa- -3'
miRNA:   3'- gCCGGCGgUUAGuaGUagUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 228822 0.67 0.967505
Target:  5'- cCGGCCGCCGGUgCugcCGUCuuauaguCCGUgCGAu -3'
miRNA:   3'- -GCCGGCGGUUA-Gua-GUAGu------GGCA-GCU- -5'
9379 5' -54.2 NC_002512.2 + 177022 0.67 0.967505
Target:  5'- gGGCCGCCugcgCGUCc-CGCCaGUUGAg -3'
miRNA:   3'- gCCGGCGGuua-GUAGuaGUGG-CAGCU- -5'
9379 5' -54.2 NC_002512.2 + 130076 0.67 0.964373
Target:  5'- uGGCCGCCAGcUCGUag-UACCcgacggccgaGUCGAa -3'
miRNA:   3'- gCCGGCGGUU-AGUAguaGUGG----------CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.