miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9380 3' -55.8 NC_002512.2 + 226711 0.67 0.935654
Target:  5'- --gCGUCgaGCGACgGGAGGcCGCGGg -3'
miRNA:   3'- caaGCAGggUGCUGgCCUCUaGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 226574 0.68 0.903151
Target:  5'- -cUCGcgcUCCC-CGGCCaGGAGggCGCGGc -3'
miRNA:   3'- caAGC---AGGGuGCUGG-CCUCuaGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 224329 0.69 0.886609
Target:  5'- -gUCGUCuguuuuuccgcggcgCCGCG-CCGG-GGUCGCGGg -3'
miRNA:   3'- caAGCAG---------------GGUGCuGGCCuCUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 219045 0.67 0.948904
Target:  5'- -gUCGUCggCCGCGGCgCGGGGcucccCGCGGg -3'
miRNA:   3'- caAGCAG--GGUGCUG-GCCUCua---GCGUC- -5'
9380 3' -55.8 NC_002512.2 + 217771 0.71 0.771869
Target:  5'- --cCGUCCC-CGucGCCGG-GGUCGCGGc -3'
miRNA:   3'- caaGCAGGGuGC--UGGCCuCUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 201465 0.67 0.930794
Target:  5'- -gUgGUCCCcguCGGCCGGGG--UGCAGa -3'
miRNA:   3'- caAgCAGGGu--GCUGGCCUCuaGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 200502 0.69 0.883936
Target:  5'- --gCGUCCUcCGACCGGGGcUCGUc- -3'
miRNA:   3'- caaGCAGGGuGCUGGCCUCuAGCGuc -5'
9380 3' -55.8 NC_002512.2 + 193923 0.67 0.930794
Target:  5'- --gCGUCCCggacuccgcugACGGCCGGGGAacgUCGUc- -3'
miRNA:   3'- caaGCAGGG-----------UGCUGGCCUCU---AGCGuc -5'
9380 3' -55.8 NC_002512.2 + 193372 0.7 0.855421
Target:  5'- aGUUCGUCgCCGCGGgCGGGGA-CGaCAc -3'
miRNA:   3'- -CAAGCAG-GGUGCUgGCCUCUaGC-GUc -5'
9380 3' -55.8 NC_002512.2 + 184052 0.66 0.966699
Target:  5'- aGUUCGUgugagaCCGCG-UCGGAGAugucUCGCAa -3'
miRNA:   3'- -CAAGCAg-----GGUGCuGGCCUCU----AGCGUc -5'
9380 3' -55.8 NC_002512.2 + 181679 0.73 0.706009
Target:  5'- --gCGcCCCGCGGCCGG-GAUccCGCGGg -3'
miRNA:   3'- caaGCaGGGUGCUGGCCuCUA--GCGUC- -5'
9380 3' -55.8 NC_002512.2 + 178816 0.68 0.920404
Target:  5'- aGUUgGUCCgacaGCGcCCGGAcgugcucgGGUCGCAGg -3'
miRNA:   3'- -CAAgCAGGg---UGCuGGCCU--------CUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 177103 0.74 0.657045
Target:  5'- --gCGUCuCCGCGACCaGGAGGUC-CGGg -3'
miRNA:   3'- caaGCAG-GGUGCUGG-CCUCUAGcGUC- -5'
9380 3' -55.8 NC_002512.2 + 173402 0.66 0.956281
Target:  5'- -gUCGUCCUGCGGgaccucuCCGucGAUCGCAu -3'
miRNA:   3'- caAGCAGGGUGCU-------GGCcuCUAGCGUc -5'
9380 3' -55.8 NC_002512.2 + 169334 0.67 0.948904
Target:  5'- --gCGUUCCACGGCCGacGGAUaCGCGu -3'
miRNA:   3'- caaGCAGGGUGCUGGCc-UCUA-GCGUc -5'
9380 3' -55.8 NC_002512.2 + 169141 0.67 0.952883
Target:  5'- -cUCGUCCgCcCGGCCGccgcGGUCGCGGu -3'
miRNA:   3'- caAGCAGG-GuGCUGGCcu--CUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 162234 0.66 0.960203
Target:  5'- -gUCGagCCCGCGuCCGGGGGccCGUGGa -3'
miRNA:   3'- caAGCa-GGGUGCuGGCCUCUa-GCGUC- -5'
9380 3' -55.8 NC_002512.2 + 157117 0.67 0.940291
Target:  5'- --aCGUCCCuccCGGCguCGGGGGUCGgCGGc -3'
miRNA:   3'- caaGCAGGGu--GCUG--GCCUCUAGC-GUC- -5'
9380 3' -55.8 NC_002512.2 + 157064 0.68 0.89696
Target:  5'- cGggCGUCCCGgGGuCCGG-GGUCGCc- -3'
miRNA:   3'- -CaaGCAGGGUgCU-GGCCuCUAGCGuc -5'
9380 3' -55.8 NC_002512.2 + 155880 0.7 0.84001
Target:  5'- uGUUCGUCCC-CGA-CGGcGggCGCGGg -3'
miRNA:   3'- -CAAGCAGGGuGCUgGCCuCuaGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.