Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9380 | 5' | -57.9 | NC_002512.2 | + | 95834 | 0.74 | 0.48677 |
Target: 5'- gGCGACGGCCCGcaggaGGCCG-GGGGc -3' miRNA: 3'- gUGCUGCUGGGUaag--CCGGCaCCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 156505 | 0.7 | 0.689692 |
Target: 5'- aCACGGCGGCCUGggCGGCgGggcgcgGGGGu -3' miRNA: 3'- -GUGCUGCUGGGUaaGCCGgCa-----CCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 191495 | 0.7 | 0.689692 |
Target: 5'- gCGCGGCGACCgGcgcgcucccUUCcuacgaggaGGCCGUGGGGu -3' miRNA: 3'- -GUGCUGCUGGgU---------AAG---------CCGGCACCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 132027 | 0.7 | 0.709031 |
Target: 5'- gGCGGCGACgUcgUCGGCCa-GGGAc -3' miRNA: 3'- gUGCUGCUGgGuaAGCCGGcaCCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 107622 | 0.7 | 0.737567 |
Target: 5'- cCAgGACGuCCCcg-CGGCCGccgGGGAAg -3' miRNA: 3'- -GUgCUGCuGGGuaaGCCGGCa--CCCUU- -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 188659 | 0.7 | 0.737567 |
Target: 5'- gGCGGCGGCCCGUcguccgaccgCGGCgGUcucGGGGAc -3' miRNA: 3'- gUGCUGCUGGGUAa---------GCCGgCA---CCCUU- -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 211776 | 0.69 | 0.765338 |
Target: 5'- gACGugGagGCCCGggUGGCCGcGGGGg -3' miRNA: 3'- gUGCugC--UGGGUaaGCCGGCaCCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 101210 | 0.69 | 0.792123 |
Target: 5'- uCACGACGGCCCcgUCcGCCG-GGu-- -3' miRNA: 3'- -GUGCUGCUGGGuaAGcCGGCaCCcuu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 130191 | 0.68 | 0.808479 |
Target: 5'- gACGAgGGCCCGUcgcaugaUCGGCCaGUGGu-- -3' miRNA: 3'- gUGCUgCUGGGUA-------AGCCGG-CACCcuu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 225732 | 0.68 | 0.812697 |
Target: 5'- cCGCGGCGACUCGcucagucggggcgCGGCCGggacaUGGGAu -3' miRNA: 3'- -GUGCUGCUGGGUaa-----------GCCGGC-----ACCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 127733 | 0.68 | 0.817708 |
Target: 5'- -uCGACGACCCAgcgcggucgCGGCCGUagacggccaGGGu- -3' miRNA: 3'- guGCUGCUGGGUaa-------GCCGGCA---------CCCuu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 151042 | 0.68 | 0.825934 |
Target: 5'- gGCGGCGGCCCGUcacgCGGUccucgaCGgcgGGGGAu -3' miRNA: 3'- gUGCUGCUGGGUAa---GCCG------GCa--CCCUU- -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 222652 | 0.68 | 0.825934 |
Target: 5'- cCGCGACGGCCgGccgGGCCGaGGGGc -3' miRNA: 3'- -GUGCUGCUGGgUaagCCGGCaCCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 201653 | 0.68 | 0.833996 |
Target: 5'- gCGCGACGGCCC---CGGCCGcGGu-- -3' miRNA: 3'- -GUGCUGCUGGGuaaGCCGGCaCCcuu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 73935 | 0.68 | 0.841889 |
Target: 5'- aCGCGACGGCCUggUCuucauGuuGUGGGGu -3' miRNA: 3'- -GUGCUGCUGGGuaAGc----CggCACCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 94663 | 0.68 | 0.841889 |
Target: 5'- --aGGCGGCCCGg--GGCCG-GGGGg -3' miRNA: 3'- gugCUGCUGGGUaagCCGGCaCCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 45812 | 0.67 | 0.857139 |
Target: 5'- -uCGACGACaCCGUgauGCCGUGGGc- -3' miRNA: 3'- guGCUGCUG-GGUAagcCGGCACCCuu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 95228 | 0.67 | 0.864485 |
Target: 5'- uCGCGuCGGCCCcgcacUCGGCCacggcguuGUGGGGc -3' miRNA: 3'- -GUGCuGCUGGGua---AGCCGG--------CACCCUu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 157159 | 0.67 | 0.87859 |
Target: 5'- gGCGGCGGgCCGggCGGC-GUGGGc- -3' miRNA: 3'- gUGCUGCUgGGUaaGCCGgCACCCuu -5' |
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9380 | 5' | -57.9 | NC_002512.2 | + | 108517 | 0.67 | 0.87859 |
Target: 5'- -cCGGCG-CCCGacCGGCCG-GGGAc -3' miRNA: 3'- guGCUGCuGGGUaaGCCGGCaCCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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