miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9380 5' -57.9 NC_002512.2 + 130667 0.67 0.88534
Target:  5'- uGCGcACGACCCAcacggcggCGGCCGcGGaGAu -3'
miRNA:   3'- gUGC-UGCUGGGUaa------GCCGGCaCC-CUu -5'
9380 5' -57.9 NC_002512.2 + 201462 0.67 0.88534
Target:  5'- gAgGugGuCCCcgUCGGCCG-GGGu- -3'
miRNA:   3'- gUgCugCuGGGuaAGCCGGCaCCCuu -5'
9380 5' -57.9 NC_002512.2 + 148979 0.66 0.89444
Target:  5'- cCGCG-CGACCCAccaccugaaccacCGGCCG-GGGGg -3'
miRNA:   3'- -GUGCuGCUGGGUaa-----------GCCGGCaCCCUu -5'
9380 5' -57.9 NC_002512.2 + 88146 0.66 0.898214
Target:  5'- gGgGACGAUCCGcccgUGGCCGUcgugcGGGAAc -3'
miRNA:   3'- gUgCUGCUGGGUaa--GCCGGCA-----CCCUU- -5'
9380 5' -57.9 NC_002512.2 + 201936 0.66 0.898214
Target:  5'- gGCGACgGGCCCG---GGUaCGUGGGAGa -3'
miRNA:   3'- gUGCUG-CUGGGUaagCCG-GCACCCUU- -5'
9380 5' -57.9 NC_002512.2 + 92252 0.66 0.898214
Target:  5'- --gGACGACCgGcugUCGaaGCUGUGGGAGa -3'
miRNA:   3'- gugCUGCUGGgUa--AGC--CGGCACCCUU- -5'
9380 5' -57.9 NC_002512.2 + 113152 0.66 0.898214
Target:  5'- gGCGcCGGCCUcgccgCGGCCGggcGGGAc -3'
miRNA:   3'- gUGCuGCUGGGuaa--GCCGGCa--CCCUu -5'
9380 5' -57.9 NC_002512.2 + 156288 0.66 0.903125
Target:  5'- -cCGAgUGGCCCGUcgugaagUCGGCCGUgucgcacGGGGAg -3'
miRNA:   3'- guGCU-GCUGGGUA-------AGCCGGCA-------CCCUU- -5'
9380 5' -57.9 NC_002512.2 + 187002 0.66 0.904331
Target:  5'- aCGCGGCgGGCCUGUacgCGGgCGUGGaGGAg -3'
miRNA:   3'- -GUGCUG-CUGGGUAa--GCCgGCACC-CUU- -5'
9380 5' -57.9 NC_002512.2 + 137544 0.66 0.904331
Target:  5'- cCGCGGCGACggGUUCGGUCGc-GGAAa -3'
miRNA:   3'- -GUGCUGCUGggUAAGCCGGCacCCUU- -5'
9380 5' -57.9 NC_002512.2 + 146727 0.66 0.915914
Target:  5'- gGCGGCGGCCg---CGGCCGccGGGc- -3'
miRNA:   3'- gUGCUGCUGGguaaGCCGGCa-CCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.