miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9380 5' -57.9 NC_002512.2 + 127733 0.68 0.817708
Target:  5'- -uCGACGACCCAgcgcggucgCGGCCGUagacggccaGGGu- -3'
miRNA:   3'- guGCUGCUGGGUaa-------GCCGGCA---------CCCuu -5'
9380 5' -57.9 NC_002512.2 + 225732 0.68 0.812697
Target:  5'- cCGCGGCGACUCGcucagucggggcgCGGCCGggacaUGGGAu -3'
miRNA:   3'- -GUGCUGCUGGGUaa-----------GCCGGC-----ACCCUu -5'
9380 5' -57.9 NC_002512.2 + 130191 0.68 0.808479
Target:  5'- gACGAgGGCCCGUcgcaugaUCGGCCaGUGGu-- -3'
miRNA:   3'- gUGCUgCUGGGUA-------AGCCGG-CACCcuu -5'
9380 5' -57.9 NC_002512.2 + 101210 0.69 0.792123
Target:  5'- uCACGACGGCCCcgUCcGCCG-GGu-- -3'
miRNA:   3'- -GUGCUGCUGGGuaAGcCGGCaCCcuu -5'
9380 5' -57.9 NC_002512.2 + 211776 0.69 0.765338
Target:  5'- gACGugGagGCCCGggUGGCCGcGGGGg -3'
miRNA:   3'- gUGCugC--UGGGUaaGCCGGCaCCCUu -5'
9380 5' -57.9 NC_002512.2 + 188659 0.7 0.737567
Target:  5'- gGCGGCGGCCCGUcguccgaccgCGGCgGUcucGGGGAc -3'
miRNA:   3'- gUGCUGCUGGGUAa---------GCCGgCA---CCCUU- -5'
9380 5' -57.9 NC_002512.2 + 107622 0.7 0.737567
Target:  5'- cCAgGACGuCCCcg-CGGCCGccgGGGAAg -3'
miRNA:   3'- -GUgCUGCuGGGuaaGCCGGCa--CCCUU- -5'
9380 5' -57.9 NC_002512.2 + 132027 0.7 0.709031
Target:  5'- gGCGGCGACgUcgUCGGCCa-GGGAc -3'
miRNA:   3'- gUGCUGCUGgGuaAGCCGGcaCCCUu -5'
9380 5' -57.9 NC_002512.2 + 191495 0.7 0.689692
Target:  5'- gCGCGGCGACCgGcgcgcucccUUCcuacgaggaGGCCGUGGGGu -3'
miRNA:   3'- -GUGCUGCUGGgU---------AAG---------CCGGCACCCUu -5'
9380 5' -57.9 NC_002512.2 + 156505 0.7 0.689692
Target:  5'- aCACGGCGGCCUGggCGGCgGggcgcgGGGGu -3'
miRNA:   3'- -GUGCUGCUGGGUaaGCCGgCa-----CCCUu -5'
9380 5' -57.9 NC_002512.2 + 95834 0.74 0.48677
Target:  5'- gGCGACGGCCCGcaggaGGCCG-GGGGc -3'
miRNA:   3'- gUGCUGCUGGGUaag--CCGGCaCCCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.