miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9382 3' -55.9 NC_002512.2 + 184985 0.66 0.958717
Target:  5'- cGGCCGUcgacguggagcgcUGCGGCC--CGGUGcCGCu- -3'
miRNA:   3'- -CCGGCA-------------ACGCUGGuuGCCGCaGUGug -5'
9382 3' -55.9 NC_002512.2 + 196881 0.66 0.955442
Target:  5'- uGCCGcggaUGCucAUCGACGGCGUCAUg- -3'
miRNA:   3'- cCGGCa---ACGc-UGGUUGCCGCAGUGug -5'
9382 3' -55.9 NC_002512.2 + 195100 0.66 0.955442
Target:  5'- aGGCCGaggggaUUGCGAaaccucguugacCCGggggagagGCGGUGUCGCGa -3'
miRNA:   3'- -CCGGC------AACGCU------------GGU--------UGCCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 117439 0.66 0.955442
Target:  5'- uGGCCGUgaUGC-ACCAGaagcugucgcCGGUGUCGauCGCg -3'
miRNA:   3'- -CCGGCA--ACGcUGGUU----------GCCGCAGU--GUG- -5'
9382 3' -55.9 NC_002512.2 + 132871 0.66 0.955068
Target:  5'- uGCCGUccGCGGaggaaaucgaCGACGGCGUCcccggcgACGCg -3'
miRNA:   3'- cCGGCAa-CGCUg---------GUUGCCGCAG-------UGUG- -5'
9382 3' -55.9 NC_002512.2 + 150 0.66 0.951602
Target:  5'- cGGgCGggGCG-CCGGCGGaGgagCGCGCg -3'
miRNA:   3'- -CCgGCaaCGCuGGUUGCCgCa--GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 155511 0.66 0.951602
Target:  5'- aGCUGcUGCGA-CGACGGCGUgCuCACc -3'
miRNA:   3'- cCGGCaACGCUgGUUGCCGCA-GuGUG- -5'
9382 3' -55.9 NC_002512.2 + 155661 0.66 0.951602
Target:  5'- cGGCCGUUcgccccgcgucGgGACCGcggcccACGGaCGUCGC-Cg -3'
miRNA:   3'- -CCGGCAA-----------CgCUGGU------UGCC-GCAGUGuG- -5'
9382 3' -55.9 NC_002512.2 + 189065 0.66 0.951602
Target:  5'- cGGCCGgcgGCGcucUCGACGGCGagUCucCGCg -3'
miRNA:   3'- -CCGGCaa-CGCu--GGUUGCCGC--AGu-GUG- -5'
9382 3' -55.9 NC_002512.2 + 221449 0.66 0.951602
Target:  5'- cGGCCGggGCgcggucguccGACCGGCcGCGgUGCGCg -3'
miRNA:   3'- -CCGGCaaCG----------CUGGUUGcCGCaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 229553 0.66 0.951602
Target:  5'- cGGgCGggGCG-CCGGCGGaGgagCGCGCg -3'
miRNA:   3'- -CCgGCaaCGCuGGUUGCCgCa--GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 75737 0.66 0.951602
Target:  5'- cGCCGaacgggagGCGACCgAGCGcGCGUCGgagacCGCg -3'
miRNA:   3'- cCGGCaa------CGCUGG-UUGC-CGCAGU-----GUG- -5'
9382 3' -55.9 NC_002512.2 + 223506 0.66 0.951602
Target:  5'- -cCCGUcGCGACgAccACGGCGgagaacggCACGCg -3'
miRNA:   3'- ccGGCAaCGCUGgU--UGCCGCa-------GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 211792 0.66 0.951206
Target:  5'- uGGCCGcgGgGGCCGucccgccGCGGCG-CACc- -3'
miRNA:   3'- -CCGGCaaCgCUGGU-------UGCCGCaGUGug -5'
9382 3' -55.9 NC_002512.2 + 220831 0.67 0.947545
Target:  5'- uGGCCGUgcucGuCGACgGGCuGUGUCGCGu -3'
miRNA:   3'- -CCGGCAa---C-GCUGgUUGcCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 99908 0.67 0.947545
Target:  5'- cGCCGgcGCucCCGGCGGUGUUcgauCGCg -3'
miRNA:   3'- cCGGCaaCGcuGGUUGCCGCAGu---GUG- -5'
9382 3' -55.9 NC_002512.2 + 190967 0.67 0.947545
Target:  5'- cGCCGcgGCGGCCccucCGGCGcCGuCGCc -3'
miRNA:   3'- cCGGCaaCGCUGGuu--GCCGCaGU-GUG- -5'
9382 3' -55.9 NC_002512.2 + 205490 0.67 0.943271
Target:  5'- uGGgaGagGCGGaCGACGGCGUCGCGg -3'
miRNA:   3'- -CCggCaaCGCUgGUUGCCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 183519 0.67 0.943271
Target:  5'- aGGCCGUccucgccuggcUGCgGACCGGCGucaacCGUCuGCACc -3'
miRNA:   3'- -CCGGCA-----------ACG-CUGGUUGCc----GCAG-UGUG- -5'
9382 3' -55.9 NC_002512.2 + 90632 0.67 0.943271
Target:  5'- cGGgCGgcGCGACC--CGGCGcCGCGg -3'
miRNA:   3'- -CCgGCaaCGCUGGuuGCCGCaGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.