miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9383 3' -58.8 NC_002512.2 + 102718 0.76 0.352023
Target:  5'- uUAGUGGCgGCCuCGCGGCagucccggaucaCGAUCGGACu -3'
miRNA:   3'- -GUCACUGgCGG-GUGUCG------------GCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 102487 0.75 0.407081
Target:  5'- gCGGUGGCgGuCCCGCAGgCGG-CGGACg -3'
miRNA:   3'- -GUCACUGgC-GGGUGUCgGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 130072 0.73 0.495297
Target:  5'- aCGGUGGCCGCCagcucguaguacccgACGGCCGAgucgaaGGGCg -3'
miRNA:   3'- -GUCACUGGCGGg--------------UGUCGGCUag----CCUG- -5'
9383 3' -58.8 NC_002512.2 + 102674 0.72 0.569873
Target:  5'- gGGcGGCCGCCCGCuGuCCGGggaGGACg -3'
miRNA:   3'- gUCaCUGGCGGGUGuC-GGCUag-CCUG- -5'
9383 3' -58.8 NC_002512.2 + 150068 0.71 0.618513
Target:  5'- gGGgggGACCGCcgCCGCcGCCG-UCGGGCg -3'
miRNA:   3'- gUCa--CUGGCG--GGUGuCGGCuAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 124303 0.71 0.618513
Target:  5'- ---cGACCGCgCGgAGCUGAUCGGGg -3'
miRNA:   3'- gucaCUGGCGgGUgUCGGCUAGCCUg -5'
9383 3' -58.8 NC_002512.2 + 214244 0.71 0.63808
Target:  5'- uCGGcucGCCGCCCGCGGCCGA--GGAg -3'
miRNA:   3'- -GUCac-UGGCGGGUGUCGGCUagCCUg -5'
9383 3' -58.8 NC_002512.2 + 172896 0.7 0.657629
Target:  5'- ---cGGCCGCCCACGGCUG-UCccccguggGGACu -3'
miRNA:   3'- gucaCUGGCGGGUGUCGGCuAG--------CCUG- -5'
9383 3' -58.8 NC_002512.2 + 149148 0.7 0.667379
Target:  5'- cCGG-GACCGCCgCGgGGCCGGUgccgcccgCGGGCc -3'
miRNA:   3'- -GUCaCUGGCGG-GUgUCGGCUA--------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 219597 0.7 0.677103
Target:  5'- uGGUGGCCGaCUCGCuGcCCGGcuucUCGGGCa -3'
miRNA:   3'- gUCACUGGC-GGGUGuC-GGCU----AGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 92666 0.7 0.682922
Target:  5'- cCGGgacGGCCGCCCGC-GCCGGgcgcgccgcccacCGGGCg -3'
miRNA:   3'- -GUCa--CUGGCGGGUGuCGGCUa------------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 213230 0.69 0.715585
Target:  5'- -cGUGGCCGCCaACGgcGCCGGcCGGAUc -3'
miRNA:   3'- guCACUGGCGGgUGU--CGGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 183495 0.69 0.725063
Target:  5'- ---gGGCCGCCUACGGCCGcgaGGGg -3'
miRNA:   3'- gucaCUGGCGGGUGUCGGCuagCCUg -5'
9383 3' -58.8 NC_002512.2 + 216263 0.69 0.734467
Target:  5'- aGGUGcGCCGCCCGCAccGCCaGcUCGGuCg -3'
miRNA:   3'- gUCAC-UGGCGGGUGU--CGG-CuAGCCuG- -5'
9383 3' -58.8 NC_002512.2 + 152368 0.69 0.743791
Target:  5'- aCGGaGACCGgCCGUGGCCGGUCGuaGACa -3'
miRNA:   3'- -GUCaCUGGCgGGUGUCGGCUAGC--CUG- -5'
9383 3' -58.8 NC_002512.2 + 193761 0.68 0.759431
Target:  5'- gCGGUcgUCGCCUccguccucuguuuuACAGCCGGUUGGGCc -3'
miRNA:   3'- -GUCAcuGGCGGG--------------UGUCGGCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 138989 0.68 0.762161
Target:  5'- cCAGUccGGCCGUCC-CGGaCGAUCcGGACg -3'
miRNA:   3'- -GUCA--CUGGCGGGuGUCgGCUAG-CCUG- -5'
9383 3' -58.8 NC_002512.2 + 122079 0.68 0.762161
Target:  5'- aAGUGGCUGCCgCACGcGCCGGacgcgaggUCGGcGCu -3'
miRNA:   3'- gUCACUGGCGG-GUGU-CGGCU--------AGCC-UG- -5'
9383 3' -58.8 NC_002512.2 + 215114 0.68 0.762161
Target:  5'- gCGGccGACCGCCagaACGGCCGGgguccgCGcGACg -3'
miRNA:   3'- -GUCa-CUGGCGGg--UGUCGGCUa-----GC-CUG- -5'
9383 3' -58.8 NC_002512.2 + 105059 0.68 0.788907
Target:  5'- cCGGUGuCCGgCaCGCAGCCGAagaagccggcggUCGGGu -3'
miRNA:   3'- -GUCACuGGCgG-GUGUCGGCU------------AGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.