miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9383 3' -58.8 NC_002512.2 + 35606 0.67 0.830805
Target:  5'- uGGUGGCCGuUCCugAagaugacaaacGCCGAgUUGGACg -3'
miRNA:   3'- gUCACUGGC-GGGugU-----------CGGCU-AGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 77712 0.68 0.805259
Target:  5'- aAGUGaacgagacGCCGCCCACGaguacccGCuCGcaAUCGGACa -3'
miRNA:   3'- gUCAC--------UGGCGGGUGU-------CG-GC--UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 89605 0.67 0.85402
Target:  5'- gGGUGGCC-UCCAUgacgugGGCCGGacugCGGACg -3'
miRNA:   3'- gUCACUGGcGGGUG------UCGGCUa---GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 90866 0.67 0.838717
Target:  5'- ----aGCCGUCCGC-GCCGccGUCGGACc -3'
miRNA:   3'- gucacUGGCGGGUGuCGGC--UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 92596 0.66 0.875584
Target:  5'- gGGcGGCgGuCCCGaGGCCGGUCGcGACg -3'
miRNA:   3'- gUCaCUGgC-GGGUgUCGGCUAGC-CUG- -5'
9383 3' -58.8 NC_002512.2 + 92633 0.66 0.868588
Target:  5'- aCGGcGGCCGCCgGC-GCCGGgacccgcgCGGAUn -3'
miRNA:   3'- -GUCaCUGGCGGgUGuCGGCUa-------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 92666 0.7 0.682922
Target:  5'- cCGGgacGGCCGCCCGC-GCCGGgcgcgccgcccacCGGGCg -3'
miRNA:   3'- -GUCa--CUGGCGGGUGuCGGCUa------------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 92998 0.67 0.814493
Target:  5'- uGGUGGCCGUCuCGguGgCGGaCGGGCa -3'
miRNA:   3'- gUCACUGGCGG-GUguCgGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 93711 0.66 0.888974
Target:  5'- cCGGcGAccCCGCCgCGCGGCgGAUCgacggGGACg -3'
miRNA:   3'- -GUCaCU--GGCGG-GUGUCGgCUAG-----CCUG- -5'
9383 3' -58.8 NC_002512.2 + 95160 0.67 0.85402
Target:  5'- gAG-GACCGgagccuucCCCACGGCCcccaggauGUCGGGCa -3'
miRNA:   3'- gUCaCUGGC--------GGGUGUCGGc-------UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 98146 0.66 0.875584
Target:  5'- ---cGGCCGCCCGCcccGGCggucgccgCGGUCuGGACg -3'
miRNA:   3'- gucaCUGGCGGGUG---UCG--------GCUAG-CCUG- -5'
9383 3' -58.8 NC_002512.2 + 99125 0.68 0.788907
Target:  5'- aAGaGAUCGCgCACGGCCGGaucgUCGGGg -3'
miRNA:   3'- gUCaCUGGCGgGUGUCGGCU----AGCCUg -5'
9383 3' -58.8 NC_002512.2 + 102487 0.75 0.407081
Target:  5'- gCGGUGGCgGuCCCGCAGgCGG-CGGACg -3'
miRNA:   3'- -GUCACUGgC-GGGUGUCgGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 102674 0.72 0.569873
Target:  5'- gGGcGGCCGCCCGCuGuCCGGggaGGACg -3'
miRNA:   3'- gUCaCUGGCGGGUGuC-GGCUag-CCUG- -5'
9383 3' -58.8 NC_002512.2 + 102718 0.76 0.352023
Target:  5'- uUAGUGGCgGCCuCGCGGCagucccggaucaCGAUCGGACu -3'
miRNA:   3'- -GUCACUGgCGG-GUGUCG------------GCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 105059 0.68 0.788907
Target:  5'- cCGGUGuCCGgCaCGCAGCCGAagaagccggcggUCGGGu -3'
miRNA:   3'- -GUCACuGGCgG-GUGUCGGCU------------AGCCUg -5'
9383 3' -58.8 NC_002512.2 + 108425 0.66 0.882381
Target:  5'- --cUGcGCCGCCCGgGGCCGGgggcCGGGg -3'
miRNA:   3'- gucAC-UGGCGGGUgUCGGCUa---GCCUg -5'
9383 3' -58.8 NC_002512.2 + 109114 0.66 0.867878
Target:  5'- -----cCCGCCgACGGCCGccgaguccagcacGUCGGACu -3'
miRNA:   3'- gucacuGGCGGgUGUCGGC-------------UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 113660 0.67 0.838717
Target:  5'- ---cGGCCGgCCGCGagggugcgcGCgGGUCGGACg -3'
miRNA:   3'- gucaCUGGCgGGUGU---------CGgCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 121333 0.66 0.888974
Target:  5'- aCGGUGACCucGCUCcgGCGGCgGGgccgUUGGACg -3'
miRNA:   3'- -GUCACUGG--CGGG--UGUCGgCU----AGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.