miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9383 3' -58.8 NC_002512.2 + 227088 0.68 0.806106
Target:  5'- gGGUcccGCCGgCCGcCGGCCGgGUCGGGCu -3'
miRNA:   3'- gUCAc--UGGCgGGU-GUCGGC-UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 224118 0.68 0.788907
Target:  5'- uGGUGACCaucucggccgugGaCCCGC-GCCGGgaggCGGACg -3'
miRNA:   3'- gUCACUGG------------C-GGGUGuCGGCUa---GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 222517 0.67 0.846458
Target:  5'- --cUGGCCGCCCgccGCGGCCGccgucgcggUGGGCc -3'
miRNA:   3'- gucACUGGCGGG---UGUCGGCua-------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 221249 0.67 0.85402
Target:  5'- ---cGGCCGgCCGCGGCgGAagUCGGGg -3'
miRNA:   3'- gucaCUGGCgGGUGUCGgCU--AGCCUg -5'
9383 3' -58.8 NC_002512.2 + 219597 0.7 0.677103
Target:  5'- uGGUGGCCGaCUCGCuGcCCGGcuucUCGGGCa -3'
miRNA:   3'- gUCACUGGC-GGGUGuC-GGCU----AGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 216263 0.69 0.734467
Target:  5'- aGGUGcGCCGCCCGCAccGCCaGcUCGGuCg -3'
miRNA:   3'- gUCAC-UGGCGGGUGU--CGG-CuAGCCuG- -5'
9383 3' -58.8 NC_002512.2 + 215114 0.68 0.762161
Target:  5'- gCGGccGACCGCCagaACGGCCGGgguccgCGcGACg -3'
miRNA:   3'- -GUCa-CUGGCGGg--UGUCGGCUa-----GC-CUG- -5'
9383 3' -58.8 NC_002512.2 + 214244 0.71 0.63808
Target:  5'- uCGGcucGCCGCCCGCGGCCGA--GGAg -3'
miRNA:   3'- -GUCac-UGGCGGGUGUCGGCUagCCUg -5'
9383 3' -58.8 NC_002512.2 + 213230 0.69 0.715585
Target:  5'- -cGUGGCCGCCaACGgcGCCGGcCGGAUc -3'
miRNA:   3'- guCACUGGCGGgUGU--CGGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 212364 0.67 0.814493
Target:  5'- gAGcUGGCCGCCUAC-GCCGAcgCcGACg -3'
miRNA:   3'- gUC-ACUGGCGGGUGuCGGCUa-GcCUG- -5'
9383 3' -58.8 NC_002512.2 + 201924 0.67 0.846458
Target:  5'- ---cGGCCGCCCAUcGgCGA-CGGGCc -3'
miRNA:   3'- gucaCUGGCGGGUGuCgGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 200709 0.66 0.882381
Target:  5'- gGGUGgcgucgggcuGCCGCCCgGCGGuCCGAaCGGGu -3'
miRNA:   3'- gUCAC----------UGGCGGG-UGUC-GGCUaGCCUg -5'
9383 3' -58.8 NC_002512.2 + 194634 0.66 0.882381
Target:  5'- gCGGggGACCuGCCCGuccucuucuCCGAUCGGGCg -3'
miRNA:   3'- -GUCa-CUGG-CGGGUguc------GGCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 193761 0.68 0.759431
Target:  5'- gCGGUcgUCGCCUccguccucuguuuuACAGCCGGUUGGGCc -3'
miRNA:   3'- -GUCAcuGGCGGG--------------UGUCGGCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 193676 0.68 0.788907
Target:  5'- cCAGgagGGCU-CCCGCAGUCGGUCccgggGGACg -3'
miRNA:   3'- -GUCa--CUGGcGGGUGUCGGCUAG-----CCUG- -5'
9383 3' -58.8 NC_002512.2 + 184680 0.67 0.838717
Target:  5'- uCGGcGGCCGUCCGCGccGCCGGUCccGGuCg -3'
miRNA:   3'- -GUCaCUGGCGGGUGU--CGGCUAG--CCuG- -5'
9383 3' -58.8 NC_002512.2 + 183495 0.69 0.725063
Target:  5'- ---gGGCCGCCUACGGCCGcgaGGGg -3'
miRNA:   3'- gucaCUGGCGGGUGUCGGCuagCCUg -5'
9383 3' -58.8 NC_002512.2 + 179230 0.67 0.846458
Target:  5'- --uUGugCGCCaGCAGCUGG-CGGGCc -3'
miRNA:   3'- gucACugGCGGgUGUCGGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 176432 0.67 0.846458
Target:  5'- gGGUGGCCaucuGCgCCGCGGUCGGggugUCGGGu -3'
miRNA:   3'- gUCACUGG----CG-GGUGUCGGCU----AGCCUg -5'
9383 3' -58.8 NC_002512.2 + 172896 0.7 0.657629
Target:  5'- ---cGGCCGCCCACGGCUG-UCccccguggGGACu -3'
miRNA:   3'- gucaCUGGCGGGUGUCGGCuAG--------CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.