miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9383 3' -58.8 NC_002512.2 + 121566 0.67 0.85402
Target:  5'- ---cGACCGCCCGCcgcgcGCCGccaUGGACc -3'
miRNA:   3'- gucaCUGGCGGGUGu----CGGCua-GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 122079 0.68 0.762161
Target:  5'- aAGUGGCUGCCgCACGcGCCGGacgcgaggUCGGcGCu -3'
miRNA:   3'- gUCACUGGCGG-GUGU-CGGCU--------AGCC-UG- -5'
9383 3' -58.8 NC_002512.2 + 122306 0.66 0.891554
Target:  5'- -cGUGACCaagaaggcgaacgugGCCCugAGgCGGgggaCGGACa -3'
miRNA:   3'- guCACUGG---------------CGGGugUCgGCUa---GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 122393 0.68 0.797575
Target:  5'- gCAGaGACCGCUgcgGGCCGGUCGcGGCg -3'
miRNA:   3'- -GUCaCUGGCGGgugUCGGCUAGC-CUG- -5'
9383 3' -58.8 NC_002512.2 + 124303 0.71 0.618513
Target:  5'- ---cGACCGCgCGgAGCUGAUCGGGg -3'
miRNA:   3'- gucaCUGGCGgGUgUCGGCUAGCCUg -5'
9383 3' -58.8 NC_002512.2 + 128840 0.67 0.830805
Target:  5'- gCAGcUGcACCGCUCGgGcGCCGcgCGGGCc -3'
miRNA:   3'- -GUC-AC-UGGCGGGUgU-CGGCuaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 130072 0.73 0.495297
Target:  5'- aCGGUGGCCGCCagcucguaguacccgACGGCCGAgucgaaGGGCg -3'
miRNA:   3'- -GUCACUGGCGGg--------------UGUCGGCUag----CCUG- -5'
9383 3' -58.8 NC_002512.2 + 131996 0.66 0.888974
Target:  5'- -cGUgGGCCGCCCcggGC-GCCGGggGGACc -3'
miRNA:   3'- guCA-CUGGCGGG---UGuCGGCUagCCUG- -5'
9383 3' -58.8 NC_002512.2 + 134861 0.66 0.888974
Target:  5'- aCAGccUGACCGCCCcccuGCCc--CGGACg -3'
miRNA:   3'- -GUC--ACUGGCGGGugu-CGGcuaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 138989 0.68 0.762161
Target:  5'- cCAGUccGGCCGUCC-CGGaCGAUCcGGACg -3'
miRNA:   3'- -GUCA--CUGGCGGGuGUCgGCUAG-CCUG- -5'
9383 3' -58.8 NC_002512.2 + 139465 0.66 0.868588
Target:  5'- gAGUcGACCGCuaCUAUGGCCG--CGGACg -3'
miRNA:   3'- gUCA-CUGGCG--GGUGUCGGCuaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 144633 0.66 0.868588
Target:  5'- -cGUGGCgGCCaCGCGGCgGAUCuacGACc -3'
miRNA:   3'- guCACUGgCGG-GUGUCGgCUAGc--CUG- -5'
9383 3' -58.8 NC_002512.2 + 145695 0.67 0.838717
Target:  5'- gAGUGGCUGCgCCGCuggucccGCCGAaccUGGACc -3'
miRNA:   3'- gUCACUGGCG-GGUGu------CGGCUa--GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 149148 0.7 0.667379
Target:  5'- cCGG-GACCGCCgCGgGGCCGGUgccgcccgCGGGCc -3'
miRNA:   3'- -GUCaCUGGCGG-GUgUCGGCUA--------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 149503 0.66 0.888974
Target:  5'- gGGUGGuCaaaaGgCCGCGGCCGGagCGGGCc -3'
miRNA:   3'- gUCACU-Gg---CgGGUGUCGGCUa-GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 150068 0.71 0.618513
Target:  5'- gGGgggGACCGCcgCCGCcGCCG-UCGGGCg -3'
miRNA:   3'- gUCa--CUGGCG--GGUGuCGGCuAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 150409 0.67 0.830805
Target:  5'- ---cGaACCGCCCACGGgCGcgCGGuCg -3'
miRNA:   3'- gucaC-UGGCGGGUGUCgGCuaGCCuG- -5'
9383 3' -58.8 NC_002512.2 + 152368 0.69 0.743791
Target:  5'- aCGGaGACCGgCCGUGGCCGGUCGuaGACa -3'
miRNA:   3'- -GUCaCUGGCgGGUGUCGGCUAGC--CUG- -5'
9383 3' -58.8 NC_002512.2 + 169325 0.67 0.85402
Target:  5'- cCAGaaAUCGCguuCCACGGCCGA-CGGAUa -3'
miRNA:   3'- -GUCacUGGCG---GGUGUCGGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 170348 0.66 0.868588
Target:  5'- uCGGUGGCCGCgaucagcguggCCAgGGCCGugcgCGG-Cg -3'
miRNA:   3'- -GUCACUGGCG-----------GGUgUCGGCua--GCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.