Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 150409 | 0.67 | 0.830805 |
Target: 5'- ---cGaACCGCCCACGGgCGcgCGGuCg -3' miRNA: 3'- gucaC-UGGCGGGUGUCgGCuaGCCuG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 128840 | 0.67 | 0.830805 |
Target: 5'- gCAGcUGcACCGCUCGgGcGCCGcgCGGGCc -3' miRNA: 3'- -GUC-AC-UGGCGGGUgU-CGGCuaGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 35606 | 0.67 | 0.830805 |
Target: 5'- uGGUGGCCGuUCCugAagaugacaaacGCCGAgUUGGACg -3' miRNA: 3'- gUCACUGGC-GGGugU-----------CGGCU-AGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 212364 | 0.67 | 0.814493 |
Target: 5'- gAGcUGGCCGCCUAC-GCCGAcgCcGACg -3' miRNA: 3'- gUC-ACUGGCGGGUGuCGGCUa-GcCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 92998 | 0.67 | 0.814493 |
Target: 5'- uGGUGGCCGUCuCGguGgCGGaCGGGCa -3' miRNA: 3'- gUCACUGGCGG-GUguCgGCUaGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 113660 | 0.67 | 0.838717 |
Target: 5'- ---cGGCCGgCCGCGagggugcgcGCgGGUCGGACg -3' miRNA: 3'- gucaCUGGCgGGUGU---------CGgCUAGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 176432 | 0.67 | 0.846458 |
Target: 5'- gGGUGGCCaucuGCgCCGCGGUCGGggugUCGGGu -3' miRNA: 3'- gUCACUGG----CG-GGUGUCGGCU----AGCCUg -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 221249 | 0.67 | 0.85402 |
Target: 5'- ---cGGCCGgCCGCGGCgGAagUCGGGg -3' miRNA: 3'- gucaCUGGCgGGUGUCGgCU--AGCCUg -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 169325 | 0.67 | 0.85402 |
Target: 5'- cCAGaaAUCGCguuCCACGGCCGA-CGGAUa -3' miRNA: 3'- -GUCacUGGCG---GGUGUCGGCUaGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 121566 | 0.67 | 0.85402 |
Target: 5'- ---cGACCGCCCGCcgcgcGCCGccaUGGACc -3' miRNA: 3'- gucaCUGGCGGGUGu----CGGCua-GCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 95160 | 0.67 | 0.85402 |
Target: 5'- gAG-GACCGgagccuucCCCACGGCCcccaggauGUCGGGCa -3' miRNA: 3'- gUCaCUGGC--------GGGUGUCGGc-------UAGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 89605 | 0.67 | 0.85402 |
Target: 5'- gGGUGGCC-UCCAUgacgugGGCCGGacugCGGACg -3' miRNA: 3'- gUCACUGGcGGGUG------UCGGCUa---GCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 222517 | 0.67 | 0.846458 |
Target: 5'- --cUGGCCGCCCgccGCGGCCGccgucgcggUGGGCc -3' miRNA: 3'- gucACUGGCGGG---UGUCGGCua-------GCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 201924 | 0.67 | 0.846458 |
Target: 5'- ---cGGCCGCCCAUcGgCGA-CGGGCc -3' miRNA: 3'- gucaCUGGCGGGUGuCgGCUaGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 179230 | 0.67 | 0.846458 |
Target: 5'- --uUGugCGCCaGCAGCUGG-CGGGCc -3' miRNA: 3'- gucACugGCGGgUGUCGGCUaGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 105059 | 0.68 | 0.788907 |
Target: 5'- cCGGUGuCCGgCaCGCAGCCGAagaagccggcggUCGGGu -3' miRNA: 3'- -GUCACuGGCgG-GUGUCGGCU------------AGCCUg -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 99125 | 0.68 | 0.788907 |
Target: 5'- aAGaGAUCGCgCACGGCCGGaucgUCGGGg -3' miRNA: 3'- gUCaCUGGCGgGUGUCGGCU----AGCCUg -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 122393 | 0.68 | 0.797575 |
Target: 5'- gCAGaGACCGCUgcgGGCCGGUCGcGGCg -3' miRNA: 3'- -GUCaCUGGCGGgugUCGGCUAGC-CUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 77712 | 0.68 | 0.805259 |
Target: 5'- aAGUGaacgagacGCCGCCCACGaguacccGCuCGcaAUCGGACa -3' miRNA: 3'- gUCAC--------UGGCGGGUGU-------CG-GC--UAGCCUG- -5' |
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9383 | 3' | -58.8 | NC_002512.2 | + | 224118 | 0.68 | 0.788907 |
Target: 5'- uGGUGACCaucucggccgugGaCCCGC-GCCGGgaggCGGACg -3' miRNA: 3'- gUCACUGG------------C-GGGUGuCGGCUa---GCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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