miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 100913 0.67 0.980853
Target:  5'- --aGGCCCGGCGguaggaAGACAGGCcggagaagucccAGCcGCg -3'
miRNA:   3'- ggaCUGGGCUGU------UCUGUCUG------------UCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 135464 0.67 0.980853
Target:  5'- uCCUGAUggaauaCGACGAGGUAGGCGGCa-- -3'
miRNA:   3'- -GGACUGg-----GCUGUUCUGUCUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 224132 0.67 0.980853
Target:  5'- gCCgugGACCCGcGCcggGAGGCGGACGcGUgagGCg -3'
miRNA:   3'- -GGa--CUGGGC-UG---UUCUGUCUGU-CGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 41341 0.67 0.980853
Target:  5'- aCCgGAUCCGAC-GGACGaagaacgacgucGACAGC-GCg -3'
miRNA:   3'- -GGaCUGGGCUGuUCUGU------------CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 126648 0.67 0.980853
Target:  5'- cCCUcGCCgCGGCcgucGACGGGCGGCgacGCg -3'
miRNA:   3'- -GGAcUGG-GCUGuu--CUGUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 110069 0.67 0.980222
Target:  5'- gCCUGcaacaucaagcacaACCUGGCGcagAGGcCGGuGCAGCUGCu -3'
miRNA:   3'- -GGAC--------------UGGGCUGU---UCU-GUC-UGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 82431 0.67 0.97869
Target:  5'- --aGACCa-GCAGcGACAGACGGCcGCc -3'
miRNA:   3'- ggaCUGGgcUGUU-CUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 100991 0.67 0.97869
Target:  5'- --cGACCaCGuuGugucGCAGACAGCUGCc -3'
miRNA:   3'- ggaCUGG-GCugUuc--UGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 110681 0.67 0.97869
Target:  5'- uCCUGguGCUCGcgcagccgccGCAGGGCcaGGGcCAGCUGCa -3'
miRNA:   3'- -GGAC--UGGGC----------UGUUCUG--UCU-GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 212560 0.67 0.97869
Target:  5'- -aUGACgaCGACGGGGCGacgacGACGGCgGCg -3'
miRNA:   3'- ggACUGg-GCUGUUCUGU-----CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 223449 0.67 0.97869
Target:  5'- cCCUGuCUCGGCGcccGcCAGACGGCcGCc -3'
miRNA:   3'- -GGACuGGGCUGUu--CuGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 183981 0.68 0.97635
Target:  5'- ---cGCCUGuCGGGGCGGACAGCUc- -3'
miRNA:   3'- ggacUGGGCuGUUCUGUCUGUCGAcg -5'
9385 3' -53.2 NC_002512.2 + 124315 0.68 0.97635
Target:  5'- gCUGAUCgGGgcCGcGGCGGACGuGCUGCg -3'
miRNA:   3'- gGACUGGgCU--GUuCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 195124 0.68 0.97635
Target:  5'- gUUGACCCGG-GGGAgAGGCGGUgucGCg -3'
miRNA:   3'- gGACUGGGCUgUUCUgUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 91910 0.68 0.973828
Target:  5'- cCCgcucgGGCCCGGCAcgcaGGACAuccGCgAGCUGUu -3'
miRNA:   3'- -GGa----CUGGGCUGU----UCUGUc--UG-UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 137058 0.68 0.973828
Target:  5'- --gGGCgUGAUgacgGAGGCGGGCAuGCUGCa -3'
miRNA:   3'- ggaCUGgGCUG----UUCUGUCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 190108 0.68 0.973828
Target:  5'- aCCUcAUCCGGCGcuucCAcGGCAGCUGCg -3'
miRNA:   3'- -GGAcUGGGCUGUucu-GU-CUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 227612 0.68 0.973828
Target:  5'- --cGGCCgGA--GGGCGGGCGGCgGCg -3'
miRNA:   3'- ggaCUGGgCUguUCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 115246 0.68 0.973828
Target:  5'- --cGACCCGACcaccuacacGAUAGGCGGCggggaGCg -3'
miRNA:   3'- ggaCUGGGCUGuu-------CUGUCUGUCGa----CG- -5'
9385 3' -53.2 NC_002512.2 + 108634 0.68 0.971115
Target:  5'- uCCUGACCUGcaACGGGACccacgGGGCGGUccacaUGUa -3'
miRNA:   3'- -GGACUGGGC--UGUUCUG-----UCUGUCG-----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.