miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 108634 0.68 0.971115
Target:  5'- uCCUGACCUGcaACGGGACccacgGGGCGGUccacaUGUa -3'
miRNA:   3'- -GGACUGGGC--UGUUCUG-----UCUGUCG-----ACG- -5'
9385 3' -53.2 NC_002512.2 + 110069 0.67 0.980222
Target:  5'- gCCUGcaacaucaagcacaACCUGGCGcagAGGcCGGuGCAGCUGCu -3'
miRNA:   3'- -GGAC--------------UGGGCUGU---UCU-GUC-UGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 110272 0.66 0.991715
Target:  5'- --cGACCCgGugGAGuACuuccuGGAcCAGCUGCg -3'
miRNA:   3'- ggaCUGGG-CugUUC-UG-----UCU-GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 110681 0.67 0.97869
Target:  5'- uCCUGguGCUCGcgcagccgccGCAGGGCcaGGGcCAGCUGCa -3'
miRNA:   3'- -GGAC--UGGGC----------UGUUCUG--UCU-GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 113222 0.75 0.72313
Target:  5'- uCCUcGCCCGGgGAGACGGGCAcgGCaGCa -3'
miRNA:   3'- -GGAcUGGGCUgUUCUGUCUGU--CGaCG- -5'
9385 3' -53.2 NC_002512.2 + 113271 0.66 0.992749
Target:  5'- --gGGCggCCGGCGGGGCAGccGCGGCggGCc -3'
miRNA:   3'- ggaCUG--GGCUGUUCUGUC--UGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 114882 0.71 0.878084
Target:  5'- gCCUGACCCaccuGAagGAGACguucgaGGACAcGCUGCu -3'
miRNA:   3'- -GGACUGGG----CUg-UUCUG------UCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 115246 0.68 0.973828
Target:  5'- --cGACCCGACcaccuacacGAUAGGCGGCggggaGCg -3'
miRNA:   3'- ggaCUGGGCUGuu-------CUGUCUGUCGa----CG- -5'
9385 3' -53.2 NC_002512.2 + 115525 0.71 0.89107
Target:  5'- gCUGACCUucACGcAGACGGACAuggacguGCUGCg -3'
miRNA:   3'- gGACUGGGc-UGU-UCUGUCUGU-------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 115904 0.66 0.989298
Target:  5'- uCCggGACCUGGCGAGgagagaguacgaGCgAGACGGCaugGCc -3'
miRNA:   3'- -GGa-CUGGGCUGUUC------------UG-UCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 116511 0.69 0.945906
Target:  5'- gCUGGCCCuggugcgguacacGGcCAAGACGuGcCAGCUGCu -3'
miRNA:   3'- gGACUGGG-------------CU-GUUCUGU-CuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 116735 0.66 0.992749
Target:  5'- aCgUGGCCCGGCugauggcgauGGAcCAGGcCAGCcGCu -3'
miRNA:   3'- -GgACUGGGCUGu---------UCU-GUCU-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 117103 0.66 0.989164
Target:  5'- cCCUGgACCCGGCAcagcGGcACGGGgccccguCGGCgGCg -3'
miRNA:   3'- -GGAC-UGGGCUGU----UC-UGUCU-------GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 117292 0.67 0.986202
Target:  5'- aCCUGAacgacuuCCCG-CAcuaccaccGGACGGACGGCggGUu -3'
miRNA:   3'- -GGACU-------GGGCuGU--------UCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 117864 0.73 0.797103
Target:  5'- uCCUGACguucggCCG-CAAGACGGACGccgggggcccgucGCUGCu -3'
miRNA:   3'- -GGACUG------GGCuGUUCUGUCUGU-------------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 118308 0.67 0.982848
Target:  5'- aCCUGcaguacAUCCgggugGACGGGACGGACGcGCUGg -3'
miRNA:   3'- -GGAC------UGGG-----CUGUUCUGUCUGU-CGACg -5'
9385 3' -53.2 NC_002512.2 + 119273 0.74 0.789053
Target:  5'- gCUGGCCCuGgAGGACAGcaGCAuGCUGCu -3'
miRNA:   3'- gGACUGGGcUgUUCUGUC--UGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 119320 0.78 0.533486
Target:  5'- uCCUGACCCGGCAGGACcucccgcGCGGggGCg -3'
miRNA:   3'- -GGACUGGGCUGUUCUGuc-----UGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 119448 0.67 0.984149
Target:  5'- -aUGAUCCGGCAGaucucggacaucguGGCGGAgCAGCcGCu -3'
miRNA:   3'- ggACUGGGCUGUU--------------CUGUCU-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 119843 0.74 0.770775
Target:  5'- uCCUucGACCCGuACGAGACGa--AGCUGCu -3'
miRNA:   3'- -GGA--CUGGGC-UGUUCUGUcugUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.