miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 41341 0.67 0.980853
Target:  5'- aCCgGAUCCGAC-GGACGaagaacgacgucGACAGC-GCg -3'
miRNA:   3'- -GGaCUGGGCUGuUCUGU------------CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 82431 0.67 0.97869
Target:  5'- --aGACCa-GCAGcGACAGACGGCcGCc -3'
miRNA:   3'- ggaCUGGgcUGUU-CUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 88996 0.66 0.992749
Target:  5'- --cGACCCGgagcGCGGGGacguCGGGCAGC-GCg -3'
miRNA:   3'- ggaCUGGGC----UGUUCU----GUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 89817 0.68 0.965097
Target:  5'- -aUGACgCCGAgAGGACgucgAGACcgcGCUGCa -3'
miRNA:   3'- ggACUG-GGCUgUUCUG----UCUGu--CGACG- -5'
9385 3' -53.2 NC_002512.2 + 91910 0.68 0.973828
Target:  5'- cCCgcucgGGCCCGGCAcgcaGGACAuccGCgAGCUGUu -3'
miRNA:   3'- -GGa----CUGGGCUGU----UCUGUc--UG-UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 92065 0.74 0.770775
Target:  5'- cCCUGGaaCGcuACGAGACGGACGGCcGCc -3'
miRNA:   3'- -GGACUggGC--UGUUCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 92459 0.73 0.806782
Target:  5'- aCUGGCCCacgugguguACGAGACgAGcCGGCUGCa -3'
miRNA:   3'- gGACUGGGc--------UGUUCUG-UCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 92606 0.7 0.932384
Target:  5'- cCCgaGGCCggucgCGACGacGGACGGACGGCgGCc -3'
miRNA:   3'- -GGa-CUGG-----GCUGU--UCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 92990 0.72 0.851399
Target:  5'- gCCcGACCUgguggccgucucgguGGC-GGACGGGCAGCUGUg -3'
miRNA:   3'- -GGaCUGGG---------------CUGuUCUGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 94907 0.66 0.991715
Target:  5'- --cGuCCCGGuCGccGGGCAGACAGCUcCg -3'
miRNA:   3'- ggaCuGGGCU-GU--UCUGUCUGUCGAcG- -5'
9385 3' -53.2 NC_002512.2 + 100517 0.66 0.987899
Target:  5'- --aGcACCCGcACGAGACAGAaggcgacgacGCUGCc -3'
miRNA:   3'- ggaC-UGGGC-UGUUCUGUCUgu--------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 100913 0.67 0.980853
Target:  5'- --aGGCCCGGCGguaggaAGACAGGCcggagaagucccAGCcGCg -3'
miRNA:   3'- ggaCUGGGCUGU------UCUGUCUG------------UCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 100991 0.67 0.97869
Target:  5'- --cGACCaCGuuGugucGCAGACAGCUGCc -3'
miRNA:   3'- ggaCUGG-GCugUuc--UGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 101765 0.76 0.683591
Target:  5'- gCCUGACCuuCGGCGAGACGGcgccguccucGCGGCggaGCg -3'
miRNA:   3'- -GGACUGG--GCUGUUCUGUC----------UGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 101868 0.66 0.991715
Target:  5'- --cGACCCGGCc--GCAG-CAGCcGCg -3'
miRNA:   3'- ggaCUGGGCUGuucUGUCuGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 102099 0.68 0.968207
Target:  5'- --aGACUgGACAcgGGAgAGACAGgaGCu -3'
miRNA:   3'- ggaCUGGgCUGU--UCUgUCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 103326 0.69 0.958248
Target:  5'- gCCgaGGCCCGGgcggcguagccCGGGGCGGACGGCa-- -3'
miRNA:   3'- -GGa-CUGGGCU-----------GUUCUGUCUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 105391 0.69 0.941917
Target:  5'- --cGACCCGGCGAcGCucuuGGGCGGCaGCa -3'
miRNA:   3'- ggaCUGGGCUGUUcUG----UCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 105641 0.7 0.929343
Target:  5'- uCCgaGACCCGGcCGAGguagggcgagccgcaGCAGACGGC-GCg -3'
miRNA:   3'- -GGa-CUGGGCU-GUUC---------------UGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 105698 0.66 0.991715
Target:  5'- cUCUGucCCCGGC-GGACGaGCAGCcaggUGCa -3'
miRNA:   3'- -GGACu-GGGCUGuUCUGUcUGUCG----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.