miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 228536 0.66 0.990567
Target:  5'- --cGACgagaCGACAcgggAGGCGGACGGCaGCc -3'
miRNA:   3'- ggaCUGg---GCUGU----UCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 228303 0.67 0.984683
Target:  5'- --gGACCCGGgGcGGGgGGACgAGCUGUa -3'
miRNA:   3'- ggaCUGGGCUgU-UCUgUCUG-UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 228037 0.76 0.673581
Target:  5'- aCCgGACggCGGCGAGACgcccgcGGACGGCUGCg -3'
miRNA:   3'- -GGaCUGg-GCUGUUCUG------UCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 227612 0.68 0.973828
Target:  5'- --cGGCCgGA--GGGCGGGCGGCgGCg -3'
miRNA:   3'- ggaCUGGgCUguUCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 224132 0.67 0.980853
Target:  5'- gCCgugGACCCGcGCcggGAGGCGGACGcGUgagGCg -3'
miRNA:   3'- -GGa--CUGGGC-UG---UUCUGUCUGU-CGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 223449 0.67 0.97869
Target:  5'- cCCUGuCUCGGCGcccGcCAGACGGCcGCc -3'
miRNA:   3'- -GGACuGGGCUGUu--CuGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 223393 0.66 0.991605
Target:  5'- uCCUGAgCCUGGacgucguCAAGAaguuCAGCUGCg -3'
miRNA:   3'- -GGACU-GGGCU-------GUUCUgucuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 222723 0.66 0.990567
Target:  5'- aCCUG-CCUG-CuGGACGGcaacggcCAGCUGCu -3'
miRNA:   3'- -GGACuGGGCuGuUCUGUCu------GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 220666 0.69 0.956026
Target:  5'- aCCUGGCCCGccGCGucgugcugggcgacgGGACGGAgguCAGUcccUGCg -3'
miRNA:   3'- -GGACUGGGC--UGU---------------UCUGUCU---GUCG---ACG- -5'
9385 3' -53.2 NC_002512.2 + 216659 0.72 0.863585
Target:  5'- --cGuCCCG-CAGcACGGGCAGCUGCa -3'
miRNA:   3'- ggaCuGGGCuGUUcUGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 216234 0.69 0.941917
Target:  5'- gCUGgaGCCgCGGCGAGACGGucgucauCAGgUGCg -3'
miRNA:   3'- gGAC--UGG-GCUGUUCUGUCu------GUCgACG- -5'
9385 3' -53.2 NC_002512.2 + 212560 0.67 0.97869
Target:  5'- -aUGACgaCGACGGGGCGacgacGACGGCgGCg -3'
miRNA:   3'- ggACUGg-GCUGUUCUGU-----CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 212143 0.66 0.990567
Target:  5'- aCCUGugCguCGGCGGGcACuggcggcgGGACGGCUGg -3'
miRNA:   3'- -GGACugG--GCUGUUC-UG--------UCUGUCGACg -5'
9385 3' -53.2 NC_002512.2 + 211931 0.7 0.929343
Target:  5'- --gGAcCCCGACGGGACguccguggacgagagGGuCGGCUGCu -3'
miRNA:   3'- ggaCU-GGGCUGUUCUG---------------UCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 211741 0.73 0.823894
Target:  5'- gCCUGGCCCgcGACGcGGCccGGGC-GCUGCg -3'
miRNA:   3'- -GGACUGGG--CUGUuCUG--UCUGuCGACG- -5'
9385 3' -53.2 NC_002512.2 + 211364 0.68 0.971115
Target:  5'- gCCUGaccGCCCGGCGcGGCAu---GCUGCg -3'
miRNA:   3'- -GGAC---UGGGCUGUuCUGUcuguCGACG- -5'
9385 3' -53.2 NC_002512.2 + 209625 0.79 0.504514
Target:  5'- aCCUGcgGCCgGACgAGGACGacGACGGCUGCg -3'
miRNA:   3'- -GGAC--UGGgCUG-UUCUGU--CUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 207594 0.78 0.533486
Target:  5'- cCCUGGCCUG-CGAcGGCGG-CGGCUGCu -3'
miRNA:   3'- -GGACUGGGCuGUU-CUGUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 207383 0.69 0.9545
Target:  5'- --cGuCCCcACGAuGAUGGACGGCUGCu -3'
miRNA:   3'- ggaCuGGGcUGUU-CUGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 205706 0.71 0.904492
Target:  5'- --cGACaCCGGC--GACAGGCGGCgGCa -3'
miRNA:   3'- ggaCUG-GGCUGuuCUGUCUGUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.