miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 209625 0.79 0.504514
Target:  5'- aCCUGcgGCCgGACgAGGACGacGACGGCUGCg -3'
miRNA:   3'- -GGAC--UGGgCUG-UUCUGU--CUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 207594 0.78 0.533486
Target:  5'- cCCUGGCCUG-CGAcGGCGG-CGGCUGCu -3'
miRNA:   3'- -GGACUGGGCuGUU-CUGUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 119320 0.78 0.533486
Target:  5'- uCCUGACCCGGCAGGACcucccgcGCGGggGCg -3'
miRNA:   3'- -GGACUGGGCUGUUCUGuc-----UGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 123155 0.78 0.533486
Target:  5'- gCCgGGgCCGAgGAGGCGGACAGgaGCg -3'
miRNA:   3'- -GGaCUgGGCUgUUCUGUCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 228037 0.76 0.673581
Target:  5'- aCCgGACggCGGCGAGACgcccgcGGACGGCUGCg -3'
miRNA:   3'- -GGaCUGg-GCUGUUCUG------UCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 101765 0.76 0.683591
Target:  5'- gCCUGACCuuCGGCGAGACGGcgccguccucGCGGCggaGCg -3'
miRNA:   3'- -GGACUGG--GCUGUUCUGUC----------UGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 113222 0.75 0.72313
Target:  5'- uCCUcGCCCGGgGAGACGGGCAcgGCaGCa -3'
miRNA:   3'- -GGAcUGGGCUgUUCUGUCUGU--CGaCG- -5'
9385 3' -53.2 NC_002512.2 + 120933 0.74 0.761452
Target:  5'- cCCgggcGACCCGACGGGcaagggcgGCGGuaacCGGCUGCa -3'
miRNA:   3'- -GGa---CUGGGCUGUUC--------UGUCu---GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 157387 0.74 0.770775
Target:  5'- --gGACCgGACGAGAUcGcCGGCUGCa -3'
miRNA:   3'- ggaCUGGgCUGUUCUGuCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 92065 0.74 0.770775
Target:  5'- cCCUGGaaCGcuACGAGACGGACGGCcGCc -3'
miRNA:   3'- -GGACUggGC--UGUUCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 119843 0.74 0.770775
Target:  5'- uCCUucGACCCGuACGAGACGa--AGCUGCu -3'
miRNA:   3'- -GGA--CUGGGC-UGUUCUGUcugUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 194301 0.74 0.774472
Target:  5'- uCC-GACCCGACAGGucACcuuccucguggcccgGGACGGUUGCg -3'
miRNA:   3'- -GGaCUGGGCUGUUC--UG---------------UCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 126750 0.74 0.779064
Target:  5'- uCUUGGCCCGAgacgccuCGGGGCGcGGCGGCgGCg -3'
miRNA:   3'- -GGACUGGGCU-------GUUCUGU-CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 119273 0.74 0.789053
Target:  5'- gCUGGCCCuGgAGGACAGcaGCAuGCUGCu -3'
miRNA:   3'- gGACUGGGcUgUUCUGUC--UGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 117864 0.73 0.797103
Target:  5'- uCCUGACguucggCCG-CAAGACGGACGccgggggcccgucGCUGCu -3'
miRNA:   3'- -GGACUG------GGCuGUUCUGUCUGU-------------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 144028 0.73 0.79799
Target:  5'- aCUGGCUCGACAgaAGGCggucuAGGCGGgaGCg -3'
miRNA:   3'- gGACUGGGCUGU--UCUG-----UCUGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 124866 0.73 0.806782
Target:  5'- --gGACCCgGACGAGAacCGGGCGGCgGCc -3'
miRNA:   3'- ggaCUGGG-CUGUUCU--GUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 92459 0.73 0.806782
Target:  5'- aCUGGCCCacgugguguACGAGACgAGcCGGCUGCa -3'
miRNA:   3'- gGACUGGGc--------UGUUCUG-UCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 211741 0.73 0.823894
Target:  5'- gCCUGGCCCgcGACGcGGCccGGGC-GCUGCg -3'
miRNA:   3'- -GGACUGGG--CUGUuCUG--UCUGuCGACG- -5'
9385 3' -53.2 NC_002512.2 + 190073 0.72 0.848274
Target:  5'- gCUGGCCgCGGCcGGucaGCGGGCucGGCUGCg -3'
miRNA:   3'- gGACUGG-GCUGuUC---UGUCUG--UCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.