miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 205662 0.72 0.870939
Target:  5'- --gGGCCCGACGccuCGGACAGCUccgGCg -3'
miRNA:   3'- ggaCUGGGCUGUucuGUCUGUCGA---CG- -5'
9385 3' -53.2 NC_002512.2 + 204878 0.66 0.991715
Target:  5'- --cGACCgaCGGCGAGcucuCGGACGGCgaGCg -3'
miRNA:   3'- ggaCUGG--GCUGUUCu---GUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 204210 0.66 0.989298
Target:  5'- aCCUGcguUCCGACGAGGC--GCAGCg-- -3'
miRNA:   3'- -GGACu--GGGCUGUUCUGucUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 202656 0.66 0.992749
Target:  5'- gCCcGGCCCGcucccuCAGGGCAcGGCGGCg-- -3'
miRNA:   3'- -GGaCUGGGCu-----GUUCUGU-CUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 197659 0.71 0.910533
Target:  5'- cUCUGGCCCGACGAGGUGGAC-GCc-- -3'
miRNA:   3'- -GGACUGGGCUGUUCUGUCUGuCGacg -5'
9385 3' -53.2 NC_002512.2 + 195343 0.67 0.980853
Target:  5'- gCgUGACCCGGCGccgGGAaccccgggugcUGGuCGGCUGCc -3'
miRNA:   3'- -GgACUGGGCUGU---UCU-----------GUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 195124 0.68 0.97635
Target:  5'- gUUGACCCGG-GGGAgAGGCGGUgucGCg -3'
miRNA:   3'- gGACUGGGCUgUUCUgUCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 194301 0.74 0.774472
Target:  5'- uCC-GACCCGACAGGucACcuuccucguggcccgGGACGGUUGCg -3'
miRNA:   3'- -GGaCUGGGCUGUUC--UG---------------UCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 192086 0.66 0.990567
Target:  5'- cCCUGACCCagaGCgAGGGCGGcgucauguuccACGGgaGCg -3'
miRNA:   3'- -GGACUGGGc--UG-UUCUGUC-----------UGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 191469 0.66 0.990567
Target:  5'- -gUGGgCCGAguaCGAGGCgccGGACAGCgcgGCg -3'
miRNA:   3'- ggACUgGGCU---GUUCUG---UCUGUCGa--CG- -5'
9385 3' -53.2 NC_002512.2 + 191076 0.66 0.990567
Target:  5'- gCUGGCUgugCGGCAaguggggguGGAUGGugGGUUGCu -3'
miRNA:   3'- gGACUGG---GCUGU---------UCUGUCugUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 190921 0.66 0.992348
Target:  5'- --gGACCUGACGAGGCAG-CGGaaccagacccggGCg -3'
miRNA:   3'- ggaCUGGGCUGUUCUGUCuGUCga----------CG- -5'
9385 3' -53.2 NC_002512.2 + 190108 0.68 0.973828
Target:  5'- aCCUcAUCCGGCGcuucCAcGGCAGCUGCg -3'
miRNA:   3'- -GGAcUGGGCUGUucu-GU-CUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 190073 0.72 0.848274
Target:  5'- gCUGGCCgCGGCcGGucaGCGGGCucGGCUGCg -3'
miRNA:   3'- gGACUGG-GCUGuUC---UGUCUG--UCGACG- -5'
9385 3' -53.2 NC_002512.2 + 185612 0.66 0.991715
Target:  5'- uCCUGGCCaaCGGCGucccguGuCGGuGCAGCUGUc -3'
miRNA:   3'- -GGACUGG--GCUGUu-----CuGUC-UGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 185365 0.66 0.992749
Target:  5'- gCCgucGACUgCGACAccuucGGCGG-CGGCUGCg -3'
miRNA:   3'- -GGa--CUGG-GCUGUu----CUGUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 183981 0.68 0.97635
Target:  5'- ---cGCCUGuCGGGGCGGACAGCUc- -3'
miRNA:   3'- ggacUGGGCuGUUCUGUCUGUCGAcg -5'
9385 3' -53.2 NC_002512.2 + 181400 0.68 0.961779
Target:  5'- cCCUGGCCUccgccgggGACGcguucaGGAUGGccguCAGCUGCg -3'
miRNA:   3'- -GGACUGGG--------CUGU------UCUGUCu---GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 179303 0.66 0.987899
Target:  5'- uCCaGuCCgcgggCGGCGAGGCGGGCAGaucCUGCa -3'
miRNA:   3'- -GGaCuGG-----GCUGUUCUGUCUGUC---GACG- -5'
9385 3' -53.2 NC_002512.2 + 172576 0.66 0.989298
Target:  5'- uCCUccgcGCCCG-CGAGuACgAGAcCGGCUGCg -3'
miRNA:   3'- -GGAc---UGGGCuGUUC-UG-UCU-GUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.