miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 164207 0.7 0.913817
Target:  5'- uGCAg--GGCCUCGGGGccGCCGGGAa- -3'
miRNA:   3'- gCGUaagCUGGAGCCUU--CGGCUCUgg -5'
9386 3' -54.3 NC_002512.2 + 204853 0.69 0.919416
Target:  5'- gGCggUCGGuCCUCguGGAGGuCCGcGACCg -3'
miRNA:   3'- gCGuaAGCU-GGAG--CCUUC-GGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 185363 0.69 0.924789
Target:  5'- uCGCcgUCGACUgcgacaccuUCGGcGGCggcugCGAGGCCg -3'
miRNA:   3'- -GCGuaAGCUGG---------AGCCuUCG-----GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 212425 0.69 0.924789
Target:  5'- gGCGggaggUCGAgUUCGGGccggccGGCCGcGACCg -3'
miRNA:   3'- gCGUa----AGCUgGAGCCU------UCGGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 52021 0.69 0.924789
Target:  5'- ----cUCGACCgCGGucuauGGGCCGAGACUu -3'
miRNA:   3'- gcguaAGCUGGaGCC-----UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 75338 0.69 0.929936
Target:  5'- -cCAUggCGACCgaggCGGAGGCgGcGGACCg -3'
miRNA:   3'- gcGUAa-GCUGGa---GCCUUCGgC-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 82356 0.69 0.929936
Target:  5'- aGCGuUUCGcGCCUCGc--GCCGGGAUCg -3'
miRNA:   3'- gCGU-AAGC-UGGAGCcuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 124292 0.69 0.929936
Target:  5'- gGCGUgcggcUCGACCgCGcGGAGCugauCGGGGCCg -3'
miRNA:   3'- gCGUA-----AGCUGGaGC-CUUCG----GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 158235 0.69 0.934858
Target:  5'- cCGCccaaGUUCGG-CUCGGuGGCCGAGuacACCc -3'
miRNA:   3'- -GCG----UAAGCUgGAGCCuUCGGCUC---UGG- -5'
9386 3' -54.3 NC_002512.2 + 37355 0.69 0.934858
Target:  5'- uGUAUUCgGGCUUCGGuuugguucGCCGAGucGCCg -3'
miRNA:   3'- gCGUAAG-CUGGAGCCuu------CGGCUC--UGG- -5'
9386 3' -54.3 NC_002512.2 + 177102 0.69 0.934858
Target:  5'- uGCGUcuccgCGACCa-GGAGGuCCGGGugCg -3'
miRNA:   3'- gCGUAa----GCUGGagCCUUC-GGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 127898 0.69 0.934858
Target:  5'- gGUAcUCGACCgUCGGAucGGCCacGAGcCCg -3'
miRNA:   3'- gCGUaAGCUGG-AGCCU--UCGG--CUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 94564 0.69 0.934858
Target:  5'- gCGCGgcugacgcCGACCUCGGGGaccGCCG-GACa -3'
miRNA:   3'- -GCGUaa------GCUGGAGCCUU---CGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 188785 0.69 0.934858
Target:  5'- gGCGgcucCGGCCUCGGcGGCCccGAUCg -3'
miRNA:   3'- gCGUaa--GCUGGAGCCuUCGGcuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 113192 0.69 0.934858
Target:  5'- uCGCcgUCcgcuCCgcgagCGGGAGCCGGGuCCu -3'
miRNA:   3'- -GCGuaAGcu--GGa----GCCUUCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 126364 0.69 0.939555
Target:  5'- aCGCGUUCacgguccucuGGCCgccCGGGAGagcgcCCGGGGCCc -3'
miRNA:   3'- -GCGUAAG----------CUGGa--GCCUUC-----GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 186472 0.69 0.944028
Target:  5'- uGCugcUCGGCCggCGGAucGCCGAGuucguCCa -3'
miRNA:   3'- gCGua-AGCUGGa-GCCUu-CGGCUCu----GG- -5'
9386 3' -54.3 NC_002512.2 + 196901 0.69 0.944028
Target:  5'- gGCGUcaUgGccaGCCUCauGGAGGCCGAGAgCa -3'
miRNA:   3'- gCGUA--AgC---UGGAG--CCUUCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 133803 0.69 0.944028
Target:  5'- uCGCGUccgUCGACCUgacCGaGAcGGCCGAGucguACCg -3'
miRNA:   3'- -GCGUA---AGCUGGA---GC-CU-UCGGCUC----UGG- -5'
9386 3' -54.3 NC_002512.2 + 130965 0.68 0.948279
Target:  5'- cCGCcUUauaucgggaGACCUCGGAGGagGAGAUCg -3'
miRNA:   3'- -GCGuAAg--------CUGGAGCCUUCggCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.