miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 131150 0.72 0.845981
Target:  5'- gGCAgggCGGCCgagaGGAagcGGCCGAGcCCg -3'
miRNA:   3'- gCGUaa-GCUGGag--CCU---UCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 189986 0.71 0.853677
Target:  5'- cCGCGUcuacaggaaggUCGACCUCaaguuGGccgcGGUCGAGGCCg -3'
miRNA:   3'- -GCGUA-----------AGCUGGAG-----CCu---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 94645 0.71 0.853677
Target:  5'- gCGCGgacgaCGGCCUCGaGGcGGcCCGGGGCCg -3'
miRNA:   3'- -GCGUaa---GCUGGAGC-CU-UC-GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 219216 0.71 0.853677
Target:  5'- uGCcgggcCGGCCUCGGcgAGGUCGGGAUCg -3'
miRNA:   3'- gCGuaa--GCUGGAGCC--UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 225805 0.71 0.861183
Target:  5'- cCGCGggCGGCCg-GGuGGCCuGGGACCu -3'
miRNA:   3'- -GCGUaaGCUGGagCCuUCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 196416 0.71 0.861183
Target:  5'- aCGCGgggggcggCGGCCgggUCGGGagaGGUCGGGGCCa -3'
miRNA:   3'- -GCGUaa------GCUGG---AGCCU---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 92554 0.71 0.861183
Target:  5'- cCGCGgcgaCGACgUCGGAGgcGCCGAcGCCg -3'
miRNA:   3'- -GCGUaa--GCUGgAGCCUU--CGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 99626 0.71 0.868494
Target:  5'- uCGCGgucgUCGcCCUCGGAGGgcccggcgcCCGAG-CCg -3'
miRNA:   3'- -GCGUa---AGCuGGAGCCUUC---------GGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 119104 0.71 0.875604
Target:  5'- uGCGggCGGCCUCGGcgcAGCUGcGGACg -3'
miRNA:   3'- gCGUaaGCUGGAGCCu--UCGGC-UCUGg -5'
9386 3' -54.3 NC_002512.2 + 117867 0.7 0.889204
Target:  5'- uGaCGUUCGGCCgcaagaCGGAcGCCgGGGGCCc -3'
miRNA:   3'- gC-GUAAGCUGGa-----GCCUuCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 127756 0.7 0.895686
Target:  5'- cCGUAgaCGGCCa-GGGucccccuccgacGGCCGAGGCCg -3'
miRNA:   3'- -GCGUaaGCUGGagCCU------------UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 226858 0.7 0.895686
Target:  5'- aGCAggCcGCCagGGAGGCCcggGAGGCCa -3'
miRNA:   3'- gCGUaaGcUGGagCCUUCGG---CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 124341 0.7 0.901334
Target:  5'- uGCGgcuguaccugaucUUCGACCccCGGgcGCCGGGGuCCa -3'
miRNA:   3'- gCGU-------------AAGCUGGa-GCCuuCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 189637 0.7 0.90195
Target:  5'- uCGCggUCGGCUucgUCGGGAcgcGCCGAcACCg -3'
miRNA:   3'- -GCGuaAGCUGG---AGCCUU---CGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 106644 0.7 0.90195
Target:  5'- gGUcgUCGAgCUCGaaGAAGUCGAGcCCg -3'
miRNA:   3'- gCGuaAGCUgGAGC--CUUCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 220871 0.7 0.905604
Target:  5'- cCGCGg--GGCCUCGGcgcucuccaucguGGCCGAcGACCu -3'
miRNA:   3'- -GCGUaagCUGGAGCCu------------UCGGCU-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 129497 0.7 0.907995
Target:  5'- aCGCucuccgCGGCCg-GGAAGUCGGGAgCCg -3'
miRNA:   3'- -GCGuaa---GCUGGagCCUUCGGCUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 220731 0.7 0.907995
Target:  5'- gGC-UUCGACCUCcaccucauGGAGcgcugggccGUCGAGGCCg -3'
miRNA:   3'- gCGuAAGCUGGAG--------CCUU---------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 131220 0.7 0.907995
Target:  5'- gGCGcUCGACgucgcggUCGGAGGCCGcgguGGCCu -3'
miRNA:   3'- gCGUaAGCUGg------AGCCUUCGGCu---CUGG- -5'
9386 3' -54.3 NC_002512.2 + 144123 0.7 0.907995
Target:  5'- uCGCGgucuaucUCGGCCaggUCGGccGCgGAGACCc -3'
miRNA:   3'- -GCGUa------AGCUGG---AGCCuuCGgCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.