miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 94564 0.69 0.934858
Target:  5'- gCGCGgcugacgcCGACCUCGGGGaccGCCG-GACa -3'
miRNA:   3'- -GCGUaa------GCUGGAGCCUU---CGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 94645 0.71 0.853677
Target:  5'- gCGCGgacgaCGGCCUCGaGGcGGcCCGGGGCCg -3'
miRNA:   3'- -GCGUaa---GCUGGAGC-CU-UC-GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 95834 0.67 0.969298
Target:  5'- gGCGa-CGGCCcgcaGGAGGCCGGGGgCg -3'
miRNA:   3'- gCGUaaGCUGGag--CCUUCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 96208 0.68 0.963121
Target:  5'- cCGCGaggUCGGCCaCGGcGGCCGcGGCg -3'
miRNA:   3'- -GCGUa--AGCUGGaGCCuUCGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 96526 0.67 0.969298
Target:  5'- aGCcg-CG-CCggCGGuguGAGCCGGGGCCg -3'
miRNA:   3'- gCGuaaGCuGGa-GCC---UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 99626 0.71 0.868494
Target:  5'- uCGCGgucgUCGcCCUCGGAGGgcccggcgcCCGAG-CCg -3'
miRNA:   3'- -GCGUa---AGCuGGAGCCUUC---------GGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 101313 0.74 0.722321
Target:  5'- uCGCAgggUCGGCCccCGGAGGCCGucgaagguGGACa -3'
miRNA:   3'- -GCGUa--AGCUGGa-GCCUUCGGC--------UCUGg -5'
9386 3' -54.3 NC_002512.2 + 101445 0.66 0.986758
Target:  5'- gCGCGgcgaCG-CCgagagCGGGgggguggacaccGGCCGAGACCc -3'
miRNA:   3'- -GCGUaa--GCuGGa----GCCU------------UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 103293 0.66 0.983374
Target:  5'- cCGCugaggagcCGGCCgucguaGGAcaggacGGCCGAGGCCc -3'
miRNA:   3'- -GCGuaa-----GCUGGag----CCU------UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 105621 0.66 0.988238
Target:  5'- gGCAc-CGGCCgucgUCGGucuCCGAGACCc -3'
miRNA:   3'- gCGUaaGCUGG----AGCCuucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 106644 0.7 0.90195
Target:  5'- gGUcgUCGAgCUCGaaGAAGUCGAGcCCg -3'
miRNA:   3'- gCGuaAGCUgGAGC--CUUCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 113192 0.69 0.934858
Target:  5'- uCGCcgUCcgcuCCgcgagCGGGAGCCGGGuCCu -3'
miRNA:   3'- -GCGuaAGcu--GGa----GCCUUCGGCUCuGG- -5'
9386 3' -54.3 NC_002512.2 + 113560 0.67 0.977124
Target:  5'- gGCGaagaCGACCUCGaaGAAGUCGcggguGACCg -3'
miRNA:   3'- gCGUaa--GCUGGAGC--CUUCGGCu----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 117867 0.7 0.889204
Target:  5'- uGaCGUUCGGCCgcaagaCGGAcGCCgGGGGCCc -3'
miRNA:   3'- gC-GUAAGCUGGa-----GCCUuCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 118551 0.66 0.983374
Target:  5'- aCGCggUCG-CgUCGGAcGUCGGGAgCg -3'
miRNA:   3'- -GCGuaAGCuGgAGCCUuCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 119104 0.71 0.875604
Target:  5'- uGCGggCGGCCUCGGcgcAGCUGcGGACg -3'
miRNA:   3'- gCGUaaGCUGGAGCCu--UCGGC-UCUGg -5'
9386 3' -54.3 NC_002512.2 + 119952 0.73 0.778404
Target:  5'- aCGCggUgGACUUCGuGgcGCUGGGGCCg -3'
miRNA:   3'- -GCGuaAgCUGGAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 121021 0.74 0.754542
Target:  5'- gGCGUgcuGACCUCGGGcgagcgcgaccucugGGCCGGGuACCc -3'
miRNA:   3'- gCGUAag-CUGGAGCCU---------------UCGGCUC-UGG- -5'
9386 3' -54.3 NC_002512.2 + 121433 0.66 0.986758
Target:  5'- cCGCGgagUCGGCCcCGGA-GCCcugaGGGGuCCg -3'
miRNA:   3'- -GCGUa--AGCUGGaGCCUuCGG----CUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 123125 0.67 0.974699
Target:  5'- cCGCGggcCGagaGCCggacgCGGAGcgccGCCGGGGCCg -3'
miRNA:   3'- -GCGUaa-GC---UGGa----GCCUU----CGGCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.