miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 7623 0.67 0.966309
Target:  5'- gCGCGUUUGgucACCgUGGAGGCCaauggGAGACg -3'
miRNA:   3'- -GCGUAAGC---UGGaGCCUUCGG-----CUCUGg -5'
9386 3' -54.3 NC_002512.2 + 30258 0.67 0.966309
Target:  5'- uCGCGUUCuGACCUUGGucauAGCCaucGGAUUu -3'
miRNA:   3'- -GCGUAAG-CUGGAGCCu---UCGGc--UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 33273 0.67 0.972093
Target:  5'- -----aCGACCUCGGAAcgaucGCUGAagaaGACCg -3'
miRNA:   3'- gcguaaGCUGGAGCCUU-----CGGCU----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 37355 0.69 0.934858
Target:  5'- uGUAUUCgGGCUUCGGuuugguucGCCGAGucGCCg -3'
miRNA:   3'- gCGUAAG-CUGGAGCCuu------CGGCUC--UGG- -5'
9386 3' -54.3 NC_002512.2 + 38705 0.66 0.985139
Target:  5'- gGcCAUgaaagUGACCUCGGAguuugaagagauAGCCGcacacuGGCCa -3'
miRNA:   3'- gC-GUAa----GCUGGAGCCU------------UCGGCu-----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 46167 0.72 0.813433
Target:  5'- aCGCuggUgGAUa-CGGGAGCCGAGAUCg -3'
miRNA:   3'- -GCGua-AgCUGgaGCCUUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 52021 0.69 0.924789
Target:  5'- ----cUCGACCgCGGucuauGGGCCGAGACUu -3'
miRNA:   3'- gcguaAGCUGGaGCC-----UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 74566 0.73 0.766568
Target:  5'- cCGCcg-CGACCUgGGcgcucuggugcucgAGGCCGGGGCCc -3'
miRNA:   3'- -GCGuaaGCUGGAgCC--------------UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 75338 0.69 0.929936
Target:  5'- -cCAUggCGACCgaggCGGAGGCgGcGGACCg -3'
miRNA:   3'- gcGUAa-GCUGGa---GCCUUCGgC-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 76093 0.67 0.969298
Target:  5'- -----cCGGCgaUCGGAAGCUGAGGCg -3'
miRNA:   3'- gcguaaGCUGg-AGCCUUCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 77086 0.67 0.980226
Target:  5'- cCGCcgUCgccgcgGACCUccgagaCGGAGGCCcggcggucaucgauaGAGACCu -3'
miRNA:   3'- -GCGuaAG------CUGGA------GCCUUCGG---------------CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 77348 0.67 0.974447
Target:  5'- --gGUUCG-CCuucgUCGGAAcgccgucGCCGAGACCc -3'
miRNA:   3'- gcgUAAGCuGG----AGCCUU-------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 82356 0.69 0.929936
Target:  5'- aGCGuUUCGcGCCUCGc--GCCGGGAUCg -3'
miRNA:   3'- gCGU-AAGC-UGGAGCcuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 88989 0.73 0.778404
Target:  5'- cCGUcgUCGACC-CGGAGcGCgGGGACg -3'
miRNA:   3'- -GCGuaAGCUGGaGCCUU-CGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 89415 0.66 0.987808
Target:  5'- gCGCGgaaccaGGCCUCGGgcGUCGgcggggucacguccGGGCCc -3'
miRNA:   3'- -GCGUaag---CUGGAGCCuuCGGC--------------UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 89667 0.68 0.959728
Target:  5'- aCGUAcUCGacguGCCUCGGGgagAGCgGcAGGCCg -3'
miRNA:   3'- -GCGUaAGC----UGGAGCCU---UCGgC-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 90490 0.78 0.506846
Target:  5'- gGCGUccUCGACgggaUCGG-GGCCGAGGCCg -3'
miRNA:   3'- gCGUA--AGCUGg---AGCCuUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 90634 0.67 0.966309
Target:  5'- gGCGgcgCGACC-CGGc-GCCGcGGCCg -3'
miRNA:   3'- gCGUaa-GCUGGaGCCuuCGGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 92554 0.71 0.861183
Target:  5'- cCGCGgcgaCGACgUCGGAGgcGCCGAcGCCg -3'
miRNA:   3'- -GCGUaa--GCUGgAGCCUU--CGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 94044 0.66 0.983374
Target:  5'- gGCGgugacggCGACCg-GGAagGGCgCGGGACCc -3'
miRNA:   3'- gCGUaa-----GCUGGagCCU--UCG-GCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.