miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 190740 0.79 0.44293
Target:  5'- cCGUAc-UGAUCUCGGAGGCCGGGACg -3'
miRNA:   3'- -GCGUaaGCUGGAGCCUUCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 221705 0.79 0.451788
Target:  5'- aCGC--UCGGCCUCGGGugcuacGCCGAGAUCc -3'
miRNA:   3'- -GCGuaAGCUGGAGCCUu-----CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 90490 0.78 0.506846
Target:  5'- gGCGUccUCGACgggaUCGG-GGCCGAGGCCg -3'
miRNA:   3'- gCGUA--AGCUGg---AGCCuUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 221833 0.77 0.564566
Target:  5'- gGCGUcCGACCcgCGGggGCgccuCGGGACCg -3'
miRNA:   3'- gCGUAaGCUGGa-GCCuuCG----GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 214849 0.76 0.613927
Target:  5'- gCGC-UUCGACCU-GGAGGCCcaGGACCu -3'
miRNA:   3'- -GCGuAAGCUGGAgCCUUCGGc-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 221174 0.76 0.64375
Target:  5'- gCGCGgccgacCGACCUCGGAguGGaCGGGACCc -3'
miRNA:   3'- -GCGUaa----GCUGGAGCCU--UCgGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 130590 0.75 0.653684
Target:  5'- gGCcg-CGGCCUCGGAGGCgGAGGa- -3'
miRNA:   3'- gCGuaaGCUGGAGCCUUCGgCUCUgg -5'
9386 3' -54.3 NC_002512.2 + 165642 0.75 0.673494
Target:  5'- uGCAUgagCG-CUUCGGggGCCuucccGAGGCCg -3'
miRNA:   3'- gCGUAa--GCuGGAGCCuuCGG-----CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 224366 0.75 0.683356
Target:  5'- gGCGggaGACCUCGGu--CCGGGACCu -3'
miRNA:   3'- gCGUaagCUGGAGCCuucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 101313 0.74 0.722321
Target:  5'- uCGCAgggUCGGCCccCGGAGGCCGucgaagguGGACa -3'
miRNA:   3'- -GCGUa--AGCUGGa-GCCUUCGGC--------UCUGg -5'
9386 3' -54.3 NC_002512.2 + 202504 0.74 0.722321
Target:  5'- aGCAgUUCGGCggCGGAGGCgGAGGCg -3'
miRNA:   3'- gCGU-AAGCUGgaGCCUUCGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 121021 0.74 0.754542
Target:  5'- gGCGUgcuGACCUCGGGcgagcgcgaccucugGGCCGGGuACCc -3'
miRNA:   3'- gCGUAag-CUGGAGCCU---------------UCGGCUC-UGG- -5'
9386 3' -54.3 NC_002512.2 + 74566 0.73 0.766568
Target:  5'- cCGCcg-CGACCUgGGcgcucuggugcucgAGGCCGGGGCCc -3'
miRNA:   3'- -GCGuaaGCUGGAgCC--------------UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 88989 0.73 0.778404
Target:  5'- cCGUcgUCGACC-CGGAGcGCgGGGACg -3'
miRNA:   3'- -GCGuaAGCUGGaGCCUU-CGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 119952 0.73 0.778404
Target:  5'- aCGCggUgGACUUCGuGgcGCUGGGGCCg -3'
miRNA:   3'- -GCGuaAgCUGGAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 46167 0.72 0.813433
Target:  5'- aCGCuggUgGAUa-CGGGAGCCGAGAUCg -3'
miRNA:   3'- -GCGua-AgCUGgaGCCUUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 211985 0.72 0.821821
Target:  5'- gGCcgUCGuCCUCGG-GGCCGccGCCg -3'
miRNA:   3'- gCGuaAGCuGGAGCCuUCGGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 143726 0.72 0.830047
Target:  5'- cCGCAgcagGGCCUCGGAggcGGCCGcGGCg -3'
miRNA:   3'- -GCGUaag-CUGGAGCCU---UCGGCuCUGg -5'
9386 3' -54.3 NC_002512.2 + 195283 0.72 0.830047
Target:  5'- uCGCGUUCc-CCgCGGggGCCGGcGCCg -3'
miRNA:   3'- -GCGUAAGcuGGaGCCuuCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 186525 0.72 0.838102
Target:  5'- aGCG-UCGACCUCugcgugcacGggGCCGAGcCCu -3'
miRNA:   3'- gCGUaAGCUGGAGc--------CuuCGGCUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.