miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 226858 0.7 0.895686
Target:  5'- aGCAggCcGCCagGGAGGCCcggGAGGCCa -3'
miRNA:   3'- gCGUaaGcUGGagCCUUCGG---CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 226466 0.68 0.948279
Target:  5'- cCGCGa--GGCgggaGGAGGCCGGGGCCc -3'
miRNA:   3'- -GCGUaagCUGgag-CCUUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 225973 0.67 0.979374
Target:  5'- aCGacgaCGACCggucUCGGggGCaagGGGACCg -3'
miRNA:   3'- -GCguaaGCUGG----AGCCuuCGg--CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 225805 0.71 0.861183
Target:  5'- cCGCGggCGGCCg-GGuGGCCuGGGACCu -3'
miRNA:   3'- -GCGUaaGCUGGagCCuUCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 225732 0.67 0.971822
Target:  5'- cCGCgg-CGACUcgcucagUCGGGgcgcGGCCGGGACa -3'
miRNA:   3'- -GCGuaaGCUGG-------AGCCU----UCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 224679 0.67 0.980226
Target:  5'- cCGCcgUCGGCUggcccgCGGuccugcccgcccuGCUGGGGCCg -3'
miRNA:   3'- -GCGuaAGCUGGa-----GCCuu-----------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 224366 0.75 0.683356
Target:  5'- gGCGggaGACCUCGGu--CCGGGACCu -3'
miRNA:   3'- gCGUaagCUGGAGCCuucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 224069 0.68 0.952311
Target:  5'- gGCGUcugCGACCUcuccaCGGAGGaCCucaggGGGACCg -3'
miRNA:   3'- gCGUAa--GCUGGA-----GCCUUC-GG-----CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 223260 0.66 0.981455
Target:  5'- gGCGUccgCGuCgUCGGggGgCGGGACg -3'
miRNA:   3'- gCGUAa--GCuGgAGCCuuCgGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 222405 0.66 0.986758
Target:  5'- aGCGccgCGGCUUCGGcggGGGCCGGcaGCCg -3'
miRNA:   3'- gCGUaa-GCUGGAGCC---UUCGGCUc-UGG- -5'
9386 3' -54.3 NC_002512.2 + 221833 0.77 0.564566
Target:  5'- gGCGUcCGACCcgCGGggGCgccuCGGGACCg -3'
miRNA:   3'- gCGUAaGCUGGa-GCCuuCG----GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 221705 0.79 0.451788
Target:  5'- aCGC--UCGGCCUCGGGugcuacGCCGAGAUCc -3'
miRNA:   3'- -GCGuaAGCUGGAGCCUu-----CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 221174 0.76 0.64375
Target:  5'- gCGCGgccgacCGACCUCGGAguGGaCGGGACCc -3'
miRNA:   3'- -GCGUaa----GCUGGAGCCU--UCgGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 220871 0.7 0.905604
Target:  5'- cCGCGg--GGCCUCGGcgcucuccaucguGGCCGAcGACCu -3'
miRNA:   3'- -GCGUaagCUGGAGCCu------------UCGGCU-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 220731 0.7 0.907995
Target:  5'- gGC-UUCGACCUCcaccucauGGAGcgcugggccGUCGAGGCCg -3'
miRNA:   3'- gCGuAAGCUGGAG--------CCUU---------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 219744 0.66 0.981455
Target:  5'- uCGC---CGACCUCuucuGCUGAGGCCg -3'
miRNA:   3'- -GCGuaaGCUGGAGccuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 219705 0.66 0.988238
Target:  5'- aGCG-UCGGCgCUCGGGGcGCgaGAGGCg -3'
miRNA:   3'- gCGUaAGCUG-GAGCCUU-CGg-CUCUGg -5'
9386 3' -54.3 NC_002512.2 + 219216 0.71 0.853677
Target:  5'- uGCcgggcCGGCCUCGGcgAGGUCGGGAUCg -3'
miRNA:   3'- gCGuaa--GCUGGAGCC--UUCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 218746 0.66 0.982815
Target:  5'- gCGCGUgucCGGcCCUCGGAcuccucGGUuccccguccggggaCGAGGCCg -3'
miRNA:   3'- -GCGUAa--GCU-GGAGCCU------UCG--------------GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 217590 0.66 0.985139
Target:  5'- gGCGgcgCcGCCUCGGggGUCGucGGCg -3'
miRNA:   3'- gCGUaa-GcUGGAGCCuuCGGCu-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.