miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 219744 0.66 0.981455
Target:  5'- uCGC---CGACCUCuucuGCUGAGGCCg -3'
miRNA:   3'- -GCGuaaGCUGGAGccuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 223260 0.66 0.981455
Target:  5'- gGCGUccgCGuCgUCGGggGgCGGGACg -3'
miRNA:   3'- gCGUAa--GCuGgAGCCuuCgGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 224679 0.67 0.980226
Target:  5'- cCGCcgUCGGCUggcccgCGGuccugcccgcccuGCUGGGGCCg -3'
miRNA:   3'- -GCGuaAGCUGGa-----GCCuu-----------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 77086 0.67 0.980226
Target:  5'- cCGCcgUCgccgcgGACCUccgagaCGGAGGCCcggcggucaucgauaGAGACCu -3'
miRNA:   3'- -GCGuaAG------CUGGA------GCCUUCGG---------------CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 164244 0.67 0.979374
Target:  5'- gGUGUUCGgcGCCguggCGGggGCCGucgggucGAUCg -3'
miRNA:   3'- gCGUAAGC--UGGa---GCCuuCGGCu------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 140888 0.67 0.979374
Target:  5'- cCGCAcucuuccgUCGGCCcccCGGccacgAAGCCgGAGACCc -3'
miRNA:   3'- -GCGUa-------AGCUGGa--GCC-----UUCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 156835 0.67 0.979374
Target:  5'- uGCGa--GGCCUgCGGggGCCGcuGCUg -3'
miRNA:   3'- gCGUaagCUGGA-GCCuuCGGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 182431 0.67 0.979374
Target:  5'- uGCGgaacUCGGCCUCGGccuccGCCGugcGGGCg -3'
miRNA:   3'- gCGUa---AGCUGGAGCCuu---CGGC---UCUGg -5'
9386 3' -54.3 NC_002512.2 + 225973 0.67 0.979374
Target:  5'- aCGacgaCGACCggucUCGGggGCaagGGGACCg -3'
miRNA:   3'- -GCguaaGCUGG----AGCCuuCGg--CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 211265 0.67 0.979374
Target:  5'- aCGCcauGUUCGACCgcuuuugCGaGugcGCCGAGugCg -3'
miRNA:   3'- -GCG---UAAGCUGGa------GC-Cuu-CGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 147420 0.67 0.979374
Target:  5'- gGCGUcUgGGCCccuuccccgccuUCGGGAGC-GGGACCg -3'
miRNA:   3'- gCGUA-AgCUGG------------AGCCUUCGgCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 193439 0.67 0.979156
Target:  5'- gCGCGaccgCGGCCgccgguggCGGGAGCgggcccuccgggaCGAGGCCc -3'
miRNA:   3'- -GCGUaa--GCUGGa-------GCCUUCG-------------GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 185743 0.67 0.977124
Target:  5'- uCGUcgUCGACCUCuGGu--CCGucGACCu -3'
miRNA:   3'- -GCGuaAGCUGGAG-CCuucGGCu-CUGG- -5'
9386 3' -54.3 NC_002512.2 + 146794 0.67 0.977124
Target:  5'- cCGCcg--GACC-CGGAGGaggcCCGGGACCu -3'
miRNA:   3'- -GCGuaagCUGGaGCCUUC----GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 113560 0.67 0.977124
Target:  5'- gGCGaagaCGACCUCGaaGAAGUCGcggguGACCg -3'
miRNA:   3'- gCGUaa--GCUGGAGC--CUUCGGCu----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 123125 0.67 0.974699
Target:  5'- cCGCGggcCGagaGCCggacgCGGAGcgccGCCGGGGCCg -3'
miRNA:   3'- -GCGUaa-GC---UGGa----GCCUU----CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 77348 0.67 0.974447
Target:  5'- --gGUUCG-CCuucgUCGGAAcgccgucGCCGAGACCc -3'
miRNA:   3'- gcgUAAGCuGG----AGCCUU-------CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 180755 0.67 0.972093
Target:  5'- cCGCGUccgCGAUCUUGGcgugcAGCCGGGcgauGCCc -3'
miRNA:   3'- -GCGUAa--GCUGGAGCCu----UCGGCUC----UGG- -5'
9386 3' -54.3 NC_002512.2 + 132027 0.67 0.972093
Target:  5'- gGCgg-CGACgUCGucGGCCaGGGACCg -3'
miRNA:   3'- gCGuaaGCUGgAGCcuUCGG-CUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 184773 0.67 0.972093
Target:  5'- gGUcgUCGACCccgaGGAcguGGCCcGGGCCu -3'
miRNA:   3'- gCGuaAGCUGGag--CCU---UCGGcUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.