miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 5' -53.7 NC_002512.2 + 228972 0.78 0.475619
Target:  5'- gAGGGCGGGAGacggaGCaGAGGCAGAAGAa -3'
miRNA:   3'- gUCUCGCUCUUa----CGgCUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 229593 0.78 0.504186
Target:  5'- gGGGGCGAGAAgggGCCcGGGCGGAgagGGAg -3'
miRNA:   3'- gUCUCGCUCUUa--CGGcUCCGUCU---UCU- -5'
9386 5' -53.7 NC_002512.2 + 190 0.78 0.504186
Target:  5'- gGGGGCGAGAAgggGCCcGGGCGGAgagGGAg -3'
miRNA:   3'- gUCUCGCUCUUa--CGGcUCCGUCU---UCU- -5'
9386 5' -53.7 NC_002512.2 + 160898 0.77 0.563335
Target:  5'- gGGaAGCGGGGcgGCCGGGGCAaGGGAc -3'
miRNA:   3'- gUC-UCGCUCUuaCGGCUCCGUcUUCU- -5'
9386 5' -53.7 NC_002512.2 + 127994 0.76 0.613976
Target:  5'- -cGGGCGAGAGgacgcGcCCGAGGCAGAacAGAc -3'
miRNA:   3'- guCUCGCUCUUa----C-GGCUCCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 104820 0.74 0.681165
Target:  5'- aCAGGGCGGGGuccacccucaCGAGGCGGAAGGu -3'
miRNA:   3'- -GUCUCGCUCUuacg------GCUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 229028 0.74 0.695274
Target:  5'- gAGAGCG-GAcgGCggagcaGAGGCAGGAGGa -3'
miRNA:   3'- gUCUCGCuCUuaCGg-----CUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 101 0.74 0.715246
Target:  5'- aAGGGCGGGuggGCgGAGGCGGcGGAg -3'
miRNA:   3'- gUCUCGCUCuuaCGgCUCCGUCuUCU- -5'
9386 5' -53.7 NC_002512.2 + 229505 0.74 0.715246
Target:  5'- aAGGGCGGGuggGCgGAGGCGGcGGAg -3'
miRNA:   3'- gUCUCGCUCuuaCGgCUCCGUCuUCU- -5'
9386 5' -53.7 NC_002512.2 + 191266 0.73 0.751396
Target:  5'- gAGGGCGGGGAggcgGCgacggggagggcggCGGGGCGGggGAc -3'
miRNA:   3'- gUCUCGCUCUUa---CG--------------GCUCCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 223875 0.73 0.754271
Target:  5'- aGGAGgcCGAGGAggagGCCGAGGaGGAGGAg -3'
miRNA:   3'- gUCUC--GCUCUUa---CGGCUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 163412 0.73 0.772243
Target:  5'- gAGAGCGAGggUGUcaacaauaccucaCGuagccGGCGGAGGAg -3'
miRNA:   3'- gUCUCGCUCuuACG-------------GCu----CCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228290 0.72 0.782447
Target:  5'- gAGAGgGAGGAcgggacCCGGGGCGGggGGa -3'
miRNA:   3'- gUCUCgCUCUUac----GGCUCCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 218782 0.72 0.826613
Target:  5'- cCGGGGaCGAG---GCCGAGGCGGAcGAc -3'
miRNA:   3'- -GUCUC-GCUCuuaCGGCUCCGUCUuCU- -5'
9386 5' -53.7 NC_002512.2 + 131531 0.71 0.8664
Target:  5'- cCGGAGgGAGA----CGAGGCGGAGGGg -3'
miRNA:   3'- -GUCUCgCUCUuacgGCUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 123145 0.7 0.873754
Target:  5'- gCGGAGCGcc---GCCGGGGCcGAGGAg -3'
miRNA:   3'- -GUCUCGCucuuaCGGCUCCGuCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 149556 0.7 0.873754
Target:  5'- gAGGGCGAGGAggacaCgGAGGgAGAGGAg -3'
miRNA:   3'- gUCUCGCUCUUac---GgCUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 167738 0.7 0.880892
Target:  5'- gCGGGGCGAGGAgcUGCCG-GGCGucGgcGAc -3'
miRNA:   3'- -GUCUCGCUCUU--ACGGCuCCGU--CuuCU- -5'
9386 5' -53.7 NC_002512.2 + 150324 0.7 0.894506
Target:  5'- cCGGcGGCGAGGAcGCCGcGGCGGugauGGAg -3'
miRNA:   3'- -GUC-UCGCUCUUaCGGCuCCGUCu---UCU- -5'
9386 5' -53.7 NC_002512.2 + 168140 0.7 0.894506
Target:  5'- --cGGCGAGGG-GCUGGGGguGggGGg -3'
miRNA:   3'- gucUCGCUCUUaCGGCUCCguCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.