miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 5' -53.7 NC_002512.2 + 101 0.74 0.715246
Target:  5'- aAGGGCGGGuggGCgGAGGCGGcGGAg -3'
miRNA:   3'- gUCUCGCUCuuaCGgCUCCGUCuUCU- -5'
9386 5' -53.7 NC_002512.2 + 190 0.78 0.504186
Target:  5'- gGGGGCGAGAAgggGCCcGGGCGGAgagGGAg -3'
miRNA:   3'- gUCUCGCUCUUa--CGGcUCCGUCU---UCU- -5'
9386 5' -53.7 NC_002512.2 + 74655 0.66 0.980096
Target:  5'- -cGGGCGGGAcgGCCGcGGGCGc---- -3'
miRNA:   3'- guCUCGCUCUuaCGGC-UCCGUcuucu -5'
9386 5' -53.7 NC_002512.2 + 75774 0.66 0.982172
Target:  5'- gCGGAGCccGGGAGga-CGGGGCAGAgcGGGg -3'
miRNA:   3'- -GUCUCG--CUCUUacgGCUCCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 76094 0.67 0.969968
Target:  5'- --cGGCGAucGGAaGCUGAGGCGGggGc -3'
miRNA:   3'- gucUCGCU--CUUaCGGCUCCGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 95702 0.68 0.948597
Target:  5'- gCGGGGaCGGGGG-GCCGGGaGgGGAAGAc -3'
miRNA:   3'- -GUCUC-GCUCUUaCGGCUC-CgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 96518 0.66 0.9848
Target:  5'- cCGGAGgGAGccgcgccggcgguguGA-GCCGGGGCcGggGAu -3'
miRNA:   3'- -GUCUCgCUC---------------UUaCGGCUCCGuCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 101442 0.66 0.977845
Target:  5'- gCGGcGCGGcGAcGCCGAGaGCGGggGGg -3'
miRNA:   3'- -GUCuCGCUcUUaCGGCUC-CGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 104820 0.74 0.681165
Target:  5'- aCAGGGCGGGGuccacccucaCGAGGCGGAAGGu -3'
miRNA:   3'- -GUCUCGCUCUuacg------GCUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 114197 0.66 0.977845
Target:  5'- -cGGGCccGGcgGCCaugagGAGGCGGAAGAu -3'
miRNA:   3'- guCUCGcuCUuaCGG-----CUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 119553 0.67 0.969968
Target:  5'- gGGAGCGGGGA--CCG-GGCGGAccgcgGGAg -3'
miRNA:   3'- gUCUCGCUCUUacGGCuCCGUCU-----UCU- -5'
9386 5' -53.7 NC_002512.2 + 123045 0.67 0.966946
Target:  5'- aGGAG-GAGGA-GgCGAuGGCGGAAGAg -3'
miRNA:   3'- gUCUCgCUCUUaCgGCU-CCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 123145 0.7 0.873754
Target:  5'- gCGGAGCGcc---GCCGGGGCcGAGGAg -3'
miRNA:   3'- -GUCUCGCucuuaCGGCUCCGuCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 127089 0.69 0.929797
Target:  5'- cCGGAGCGGagggcGGcgGCgGcGGCGGGAGAu -3'
miRNA:   3'- -GUCUCGCU-----CUuaCGgCuCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 127994 0.76 0.613976
Target:  5'- -cGGGCGAGAGgacgcGcCCGAGGCAGAacAGAc -3'
miRNA:   3'- guCUCGCUCUUa----C-GGCUCCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 130531 0.66 0.980096
Target:  5'- uCGGGucGCGGGAacAUGCCGgacAGGCGGuccGAGAc -3'
miRNA:   3'- -GUCU--CGCUCU--UACGGC---UCCGUC---UUCU- -5'
9386 5' -53.7 NC_002512.2 + 131531 0.71 0.8664
Target:  5'- cCGGAGgGAGA----CGAGGCGGAGGGg -3'
miRNA:   3'- -GUCUCgCUCUuacgGCUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 131834 0.66 0.982172
Target:  5'- -cGAGcCGGGAGgaGCCG-GGCAGGcuAGAg -3'
miRNA:   3'- guCUC-GCUCUUa-CGGCuCCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 143687 0.67 0.969968
Target:  5'- -cGGGCG-GggUGUCG-GGCAcGGAGGg -3'
miRNA:   3'- guCUCGCuCuuACGGCuCCGU-CUUCU- -5'
9386 5' -53.7 NC_002512.2 + 148487 0.67 0.969968
Target:  5'- gGGAGgaCGAGAagGCCGGGGaCGGGGa- -3'
miRNA:   3'- gUCUC--GCUCUuaCGGCUCC-GUCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.