miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 5' -53.7 NC_002512.2 + 149435 0.69 0.924505
Target:  5'- gGGGGCGGGc--GCgGGGGgAGAGGAa -3'
miRNA:   3'- gUCUCGCUCuuaCGgCUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 149523 0.67 0.969968
Target:  5'- cCGGAGCGGGccgGCC-AGGaGGAGGAc -3'
miRNA:   3'- -GUCUCGCUCuuaCGGcUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 149556 0.7 0.873754
Target:  5'- gAGGGCGAGGAggacaCgGAGGgAGAGGAg -3'
miRNA:   3'- gUCUCGCUCUUac---GgCUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 150043 0.7 0.907208
Target:  5'- gGGGGcCGGGGAcGaCGGGGCGGGAGGg -3'
miRNA:   3'- gUCUC-GCUCUUaCgGCUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 150324 0.7 0.894506
Target:  5'- cCGGcGGCGAGGAcGCCGcGGCGGugauGGAg -3'
miRNA:   3'- -GUC-UCGCUCUUaCGGCuCCGUCu---UCU- -5'
9386 5' -53.7 NC_002512.2 + 153391 0.68 0.948173
Target:  5'- cCGGAGCGAcguggagcgcggcGGcgGUCGAGGUGGcGGAa -3'
miRNA:   3'- -GUCUCGCU-------------CUuaCGGCUCCGUCuUCU- -5'
9386 5' -53.7 NC_002512.2 + 157041 0.67 0.966946
Target:  5'- cCGGAGCGAGGAccCCGgcaAGGCGGgcGu -3'
miRNA:   3'- -GUCUCGCUCUUacGGC---UCCGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 158829 0.67 0.972788
Target:  5'- ---uGCGGGAgGUGCUGAcGCGGggGAg -3'
miRNA:   3'- gucuCGCUCU-UACGGCUcCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 160898 0.77 0.563335
Target:  5'- gGGaAGCGGGGcgGCCGGGGCAaGGGAc -3'
miRNA:   3'- gUC-UCGCUCUuaCGGCUCCGUcUUCU- -5'
9386 5' -53.7 NC_002512.2 + 163412 0.73 0.772243
Target:  5'- gAGAGCGAGggUGUcaacaauaccucaCGuagccGGCGGAGGAg -3'
miRNA:   3'- gUCUCGCUCuuACG-------------GCu----CCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 166472 0.66 0.985831
Target:  5'- gAGGGCGGGGAcggcggGaCCGcGGGuCGGAGGAa -3'
miRNA:   3'- gUCUCGCUCUUa-----C-GGC-UCC-GUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 167738 0.7 0.880892
Target:  5'- gCGGGGCGAGGAgcUGCCG-GGCGucGgcGAc -3'
miRNA:   3'- -GUCUCGCUCUU--ACGGCuCCGU--CuuCU- -5'
9386 5' -53.7 NC_002512.2 + 168140 0.7 0.894506
Target:  5'- --cGGCGAGGG-GCUGGGGguGggGGg -3'
miRNA:   3'- gucUCGCUCUUaCGGCUCCguCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 189738 0.68 0.944249
Target:  5'- gCAGGGacagGAGAGgagGUcuuCGAGGCGGggGAc -3'
miRNA:   3'- -GUCUCg---CUCUUa--CG---GCUCCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 191266 0.73 0.751396
Target:  5'- gAGGGCGGGGAggcgGCgacggggagggcggCGGGGCGGggGAc -3'
miRNA:   3'- gUCUCGCUCUUa---CG--------------GCUCCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 194795 0.69 0.934851
Target:  5'- -cGAGCGGGAGcugaGCCGGGuggaGCAGGAGc -3'
miRNA:   3'- guCUCGCUCUUa---CGGCUC----CGUCUUCu -5'
9386 5' -53.7 NC_002512.2 + 195081 0.66 0.982172
Target:  5'- uCGGGGacuCGAGGG-GUCGAGGCcGAGGGg -3'
miRNA:   3'- -GUCUC---GCUCUUaCGGCUCCGuCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 196413 0.68 0.944249
Target:  5'- gGGAcGCGGGGGgcggcgGCCGGGuCGGGAGAg -3'
miRNA:   3'- gUCU-CGCUCUUa-----CGGCUCcGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 200366 0.69 0.929797
Target:  5'- aCGGGGCgGGGggUGa-GGGGCGGggGc -3'
miRNA:   3'- -GUCUCG-CUCuuACggCUCCGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 201732 0.66 0.985831
Target:  5'- gCGGGGgGAGAcgacgGCUGGGGCgccgaucccGGggGAc -3'
miRNA:   3'- -GUCUCgCUCUua---CGGCUCCG---------UCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.