miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 5' -53.7 NC_002512.2 + 229593 0.78 0.504186
Target:  5'- gGGGGCGAGAAgggGCCcGGGCGGAgagGGAg -3'
miRNA:   3'- gUCUCGCUCUUa--CGGcUCCGUCU---UCU- -5'
9386 5' -53.7 NC_002512.2 + 229505 0.74 0.715246
Target:  5'- aAGGGCGGGuggGCgGAGGCGGcGGAg -3'
miRNA:   3'- gUCUCGCUCuuaCGgCUCCGUCuUCU- -5'
9386 5' -53.7 NC_002512.2 + 229028 0.74 0.695274
Target:  5'- gAGAGCG-GAcgGCggagcaGAGGCAGGAGGa -3'
miRNA:   3'- gUCUCGCuCUuaCGg-----CUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228972 0.78 0.475619
Target:  5'- gAGGGCGGGAGacggaGCaGAGGCAGAAGAa -3'
miRNA:   3'- gUCUCGCUCUUa----CGgCUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228922 0.68 0.956603
Target:  5'- aGGAGCGgagagagaaggaGGAagGgCGAGGCgAGGAGAg -3'
miRNA:   3'- gUCUCGC------------UCUuaCgGCUCCG-UCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228748 0.67 0.969968
Target:  5'- gGGAGUGAGAGagGgaG-GGCGGAGGAg -3'
miRNA:   3'- gUCUCGCUCUUa-CggCuCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228503 0.66 0.980096
Target:  5'- aGGGGCGAGAGggacGCgGAGG-AGAgacGGAg -3'
miRNA:   3'- gUCUCGCUCUUa---CGgCUCCgUCU---UCU- -5'
9386 5' -53.7 NC_002512.2 + 228414 0.69 0.924505
Target:  5'- aCGGGGCGcuGGGggGCgGGGGCGGGAa- -3'
miRNA:   3'- -GUCUCGC--UCUuaCGgCUCCGUCUUcu -5'
9386 5' -53.7 NC_002512.2 + 228336 0.66 0.984082
Target:  5'- gGGAGCGAGcGUG-UGuGGgAGAGGAc -3'
miRNA:   3'- gUCUCGCUCuUACgGCuCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228290 0.72 0.782447
Target:  5'- gAGAGgGAGGAcgggacCCGGGGCGGggGGa -3'
miRNA:   3'- gUCUCgCUCUUac----GGCUCCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 228242 0.66 0.977845
Target:  5'- aAGGGCGAacGUGCCGGacGCGGggGc -3'
miRNA:   3'- gUCUCGCUcuUACGGCUc-CGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 227897 0.7 0.907208
Target:  5'- -cGGGCGAGu---CCGAGGCcGGAGAc -3'
miRNA:   3'- guCUCGCUCuuacGGCUCCGuCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 227518 0.67 0.972788
Target:  5'- gGGGGgGAGAGU-CCGGcGGCGGAcgGGGg -3'
miRNA:   3'- gUCUCgCUCUUAcGGCU-CCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 227477 0.66 0.977845
Target:  5'- gGGGGCGGccg-GCCgcgagGAGGUAGGAGAc -3'
miRNA:   3'- gUCUCGCUcuuaCGG-----CUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 226239 0.67 0.969968
Target:  5'- ---cGCGAGGggGCCGgAGGaGGAGGAg -3'
miRNA:   3'- gucuCGCUCUuaCGGC-UCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 226185 0.66 0.985831
Target:  5'- gGGAGCGAccGggUcgaccuccGUCGGGGaCGGGAGGa -3'
miRNA:   3'- gUCUCGCU--CuuA--------CGGCUCC-GUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 224205 0.69 0.924505
Target:  5'- aCGGAcGCGGGGAcGCCGGGGCGu---- -3'
miRNA:   3'- -GUCU-CGCUCUUaCGGCUCCGUcuucu -5'
9386 5' -53.7 NC_002512.2 + 223875 0.73 0.754271
Target:  5'- aGGAGgcCGAGGAggagGCCGAGGaGGAGGAg -3'
miRNA:   3'- gUCUC--GCUCUUa---CGGCUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 223838 0.67 0.963714
Target:  5'- uCGGAG-GGGAAggaggagGCCGAGG-AGGAGGc -3'
miRNA:   3'- -GUCUCgCUCUUa------CGGCUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 221287 0.69 0.929797
Target:  5'- uGGAGgGGGGGgagGCCGGGGUcggcGggGAg -3'
miRNA:   3'- gUCUCgCUCUUa--CGGCUCCGu---CuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.