miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 5' -53.7 NC_002512.2 + 148487 0.67 0.969968
Target:  5'- gGGAGgaCGAGAagGCCGGGGaCGGGGa- -3'
miRNA:   3'- gUCUC--GCUCUuaCGGCUCC-GUCUUcu -5'
9386 5' -53.7 NC_002512.2 + 228748 0.67 0.969968
Target:  5'- gGGAGUGAGAGagGgaG-GGCGGAGGAg -3'
miRNA:   3'- gUCUCGCUCUUa-CggCuCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 76094 0.67 0.969968
Target:  5'- --cGGCGAucGGAaGCUGAGGCGGggGc -3'
miRNA:   3'- gucUCGCU--CUUaCGGCUCCGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 143687 0.67 0.969968
Target:  5'- -cGGGCG-GggUGUCG-GGCAcGGAGGg -3'
miRNA:   3'- guCUCGCuCuuACGGCuCCGU-CUUCU- -5'
9386 5' -53.7 NC_002512.2 + 149523 0.67 0.969968
Target:  5'- cCGGAGCGGGccgGCC-AGGaGGAGGAc -3'
miRNA:   3'- -GUCUCGCUCuuaCGGcUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 219872 0.67 0.969968
Target:  5'- -cGGGUGAcGAG-GCCGGGGUcGGAGAc -3'
miRNA:   3'- guCUCGCU-CUUaCGGCUCCGuCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 226239 0.67 0.969968
Target:  5'- ---cGCGAGGggGCCGgAGGaGGAGGAg -3'
miRNA:   3'- gucuCGCUCUuaCGGC-UCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 157041 0.67 0.966946
Target:  5'- cCGGAGCGAGGAccCCGgcaAGGCGGgcGu -3'
miRNA:   3'- -GUCUCGCUCUUacGGC---UCCGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 123045 0.67 0.966946
Target:  5'- aGGAG-GAGGA-GgCGAuGGCGGAAGAg -3'
miRNA:   3'- gUCUCgCUCUUaCgGCU-CCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 223838 0.67 0.963714
Target:  5'- uCGGAG-GGGAAggaggagGCCGAGG-AGGAGGc -3'
miRNA:   3'- -GUCUCgCUCUUa------CGGCUCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228922 0.68 0.956603
Target:  5'- aGGAGCGgagagagaaggaGGAagGgCGAGGCgAGGAGAg -3'
miRNA:   3'- gUCUCGC------------UCUuaCgGCUCCG-UCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 212394 0.68 0.952714
Target:  5'- gAGAuCGAGGAggcgGCCGAcgaggacgacgGGCGGGAGGu -3'
miRNA:   3'- gUCUcGCUCUUa---CGGCU-----------CCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 95702 0.68 0.948597
Target:  5'- gCGGGGaCGGGGG-GCCGGGaGgGGAAGAc -3'
miRNA:   3'- -GUCUC-GCUCUUaCGGCUC-CgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 153391 0.68 0.948173
Target:  5'- cCGGAGCGAcguggagcgcggcGGcgGUCGAGGUGGcGGAa -3'
miRNA:   3'- -GUCUCGCU-------------CUuaCGGCUCCGUCuUCU- -5'
9386 5' -53.7 NC_002512.2 + 196413 0.68 0.944249
Target:  5'- gGGAcGCGGGGGgcggcgGCCGGGuCGGGAGAg -3'
miRNA:   3'- gUCU-CGCUCUUa-----CGGCUCcGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 189738 0.68 0.944249
Target:  5'- gCAGGGacagGAGAGgagGUcuuCGAGGCGGggGAc -3'
miRNA:   3'- -GUCUCg---CUCUUa--CG---GCUCCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 194795 0.69 0.934851
Target:  5'- -cGAGCGGGAGcugaGCCGGGuggaGCAGGAGc -3'
miRNA:   3'- guCUCGCUCUUa---CGGCUC----CGUCUUCu -5'
9386 5' -53.7 NC_002512.2 + 127089 0.69 0.929797
Target:  5'- cCGGAGCGGagggcGGcgGCgGcGGCGGGAGAu -3'
miRNA:   3'- -GUCUCGCU-----CUuaCGgCuCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 200366 0.69 0.929797
Target:  5'- aCGGGGCgGGGggUGa-GGGGCGGggGc -3'
miRNA:   3'- -GUCUCG-CUCuuACggCUCCGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 221287 0.69 0.929797
Target:  5'- uGGAGgGGGGGgagGCCGGGGUcggcGggGAg -3'
miRNA:   3'- gUCUCgCUCUUa--CGGCUCCGu---CuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.