miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 186858 0.66 0.951923
Target:  5'- -aGGaccuGCGCCucGACcuGCCCAACGCc -3'
miRNA:   3'- uaCCagu-UGCGG--UUGucCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 172467 0.66 0.951923
Target:  5'- cUGGUCGacaACGUCAccuuucAgGGGCUCAACGa -3'
miRNA:   3'- uACCAGU---UGCGGU------UgUCCGGGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 112917 0.66 0.951923
Target:  5'- -cGGaCGggGCGUCGGC-GGCCCGgugGCGCg -3'
miRNA:   3'- uaCCaGU--UGCGGUUGuCCGGGU---UGCG- -5'
9387 3' -55.1 NC_002512.2 + 132985 0.66 0.951923
Target:  5'- -gGGUagacGCGCCAggACGGGC-CAugGCc -3'
miRNA:   3'- uaCCAgu--UGCGGU--UGUCCGgGUugCG- -5'
9387 3' -55.1 NC_002512.2 + 206529 0.66 0.950708
Target:  5'- gAUGGUCAccucgugcucGCcgcacucguacaccGCCGGC-GGCCCGGgGCg -3'
miRNA:   3'- -UACCAGU----------UG--------------CGGUUGuCCGGGUUgCG- -5'
9387 3' -55.1 NC_002512.2 + 135026 0.67 0.947794
Target:  5'- ----aCGACGCCAggaucGgGGGCCCGucugACGCg -3'
miRNA:   3'- uaccaGUUGCGGU-----UgUCCGGGU----UGCG- -5'
9387 3' -55.1 NC_002512.2 + 141857 0.67 0.947794
Target:  5'- -aGGUCG--GCCAACAcGGUCCucuggAACGCc -3'
miRNA:   3'- uaCCAGUugCGGUUGU-CCGGG-----UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 186821 0.67 0.947794
Target:  5'- -cGGgacCggUGCCucgGCgAGGCCCuGCGCg -3'
miRNA:   3'- uaCCa--GuuGCGGu--UG-UCCGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 87978 0.67 0.947794
Target:  5'- --cGUCGGgGCC-GCGGcGCCCcGACGCg -3'
miRNA:   3'- uacCAGUUgCGGuUGUC-CGGG-UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 151435 0.67 0.947794
Target:  5'- -cGGcCGGCGCCAuguuGGCUCAagaugGCGCc -3'
miRNA:   3'- uaCCaGUUGCGGUugu-CCGGGU-----UGCG- -5'
9387 3' -55.1 NC_002512.2 + 186994 0.67 0.947794
Target:  5'- cAUGGgcuACG-CGGCGGGCCUGuACGCg -3'
miRNA:   3'- -UACCaguUGCgGUUGUCCGGGU-UGCG- -5'
9387 3' -55.1 NC_002512.2 + 207906 0.67 0.947369
Target:  5'- gGUGGcuccUCGACGCgGagcucgaACGGGCCCggUGg -3'
miRNA:   3'- -UACC----AGUUGCGgU-------UGUCCGGGuuGCg -5'
9387 3' -55.1 NC_002512.2 + 197672 0.67 0.945208
Target:  5'- -aGGUgGACGCCcuccucAACGGacacccgcccugccuGCCCAugGCc -3'
miRNA:   3'- uaCCAgUUGCGG------UUGUC---------------CGGGUugCG- -5'
9387 3' -55.1 NC_002512.2 + 126390 0.67 0.943438
Target:  5'- -gGGagAGCGCCcg-GGGCCCcgGGCGCc -3'
miRNA:   3'- uaCCagUUGCGGuugUCCGGG--UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 128817 0.67 0.943438
Target:  5'- -aGGUCGGCGgCGGCGcugucGGCgCAGCuGCa -3'
miRNA:   3'- uaCCAGUUGCgGUUGU-----CCGgGUUG-CG- -5'
9387 3' -55.1 NC_002512.2 + 162232 0.67 0.943438
Target:  5'- -cGGUCGagcccGCGUCcGgGGGCCCGugGa -3'
miRNA:   3'- uaCCAGU-----UGCGGuUgUCCGGGUugCg -5'
9387 3' -55.1 NC_002512.2 + 189200 0.67 0.943438
Target:  5'- -aGGUCGcCGCgGGCGGcauGCUCGACGUc -3'
miRNA:   3'- uaCCAGUuGCGgUUGUC---CGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 196636 0.67 0.943438
Target:  5'- gGUGGcCGACGCCGugugucugGgGGGCCgGuACGUg -3'
miRNA:   3'- -UACCaGUUGCGGU--------UgUCCGGgU-UGCG- -5'
9387 3' -55.1 NC_002512.2 + 217131 0.67 0.943438
Target:  5'- -cGG-CGGCaG-CAGCGGGCCCAgcuuGCGCc -3'
miRNA:   3'- uaCCaGUUG-CgGUUGUCCGGGU----UGCG- -5'
9387 3' -55.1 NC_002512.2 + 101696 0.67 0.943438
Target:  5'- -cGGUCc-CGCCGGC-GGCCCGcucgGCGa -3'
miRNA:   3'- uaCCAGuuGCGGUUGuCCGGGU----UGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.