miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 219325 0.66 0.962973
Target:  5'- -gGGagAGCGUCGGCGuGGCCCGcCGg -3'
miRNA:   3'- uaCCagUUGCGGUUGU-CCGGGUuGCg -5'
9387 3' -55.1 NC_002512.2 + 135810 0.66 0.962973
Target:  5'- -cGGg-GACGCCGACGGuCCCGuucccgccGCGCc -3'
miRNA:   3'- uaCCagUUGCGGUUGUCcGGGU--------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 129827 0.66 0.96092
Target:  5'- --cGUCGGCGCCGccgcccccgcgucuCAGcGCCCGGCGg -3'
miRNA:   3'- uacCAGUUGCGGUu-------------GUC-CGGGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 118343 0.66 0.96092
Target:  5'- cUGGUgGAgCGCCccugccgcuuccugcAGgAGGCCCuGACGCu -3'
miRNA:   3'- uACCAgUU-GCGG---------------UUgUCCGGG-UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 174924 0.66 0.959508
Target:  5'- -gGGUCAGCGucuCCAGCgaGGGCagcuCCAuCGCg -3'
miRNA:   3'- uaCCAGUUGC---GGUUG--UCCG----GGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 126733 0.66 0.959508
Target:  5'- -cGGgcgCGGCGCguGCcucuuGGCCCGagACGCc -3'
miRNA:   3'- uaCCa--GUUGCGguUGu----CCGGGU--UGCG- -5'
9387 3' -55.1 NC_002512.2 + 184540 0.66 0.959508
Target:  5'- -gGGUCAGCcggcggcgcggGCCGGCGgacGGCCCuccgaccCGCg -3'
miRNA:   3'- uaCCAGUUG-----------CGGUUGU---CCGGGuu-----GCG- -5'
9387 3' -55.1 NC_002512.2 + 41136 0.66 0.955826
Target:  5'- gAUGG-CAACuCCGcACGGGCCCGgauACGg -3'
miRNA:   3'- -UACCaGUUGcGGU-UGUCCGGGU---UGCg -5'
9387 3' -55.1 NC_002512.2 + 146874 0.66 0.955826
Target:  5'- -gGGcCAcuacCGCCcGgAGGCCCAgGCGCa -3'
miRNA:   3'- uaCCaGUu---GCGGuUgUCCGGGU-UGCG- -5'
9387 3' -55.1 NC_002512.2 + 163663 0.66 0.955826
Target:  5'- --cGUCAcCGCCAGCuGGCCgggGACGUc -3'
miRNA:   3'- uacCAGUuGCGGUUGuCCGGg--UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 174964 0.66 0.955826
Target:  5'- -cGGUUugaacuGCGCCcACAGGCa--GCGCa -3'
miRNA:   3'- uaCCAGu-----UGCGGuUGUCCGgguUGCG- -5'
9387 3' -55.1 NC_002512.2 + 178445 0.66 0.955826
Target:  5'- -gGGUCGGCGCguuccguguCGAuCAGGUggaucuguuCCAGCGCu -3'
miRNA:   3'- uaCCAGUUGCG---------GUU-GUCCG---------GGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 179049 0.66 0.955826
Target:  5'- --cGUCAGCGCCGucauccgggggaGCAGGUagugucuguaCAGCGCc -3'
miRNA:   3'- uacCAGUUGCGGU------------UGUCCGg---------GUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 192262 0.66 0.955826
Target:  5'- cUGGUCuACGCgAGCGuGCUCGggACGCu -3'
miRNA:   3'- uACCAGuUGCGgUUGUcCGGGU--UGCG- -5'
9387 3' -55.1 NC_002512.2 + 92557 0.66 0.955826
Target:  5'- -cGGcgaCGACGUCGG-AGGCgCCGACGCc -3'
miRNA:   3'- uaCCa--GUUGCGGUUgUCCG-GGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 224631 0.66 0.955826
Target:  5'- -gGGUCGcCGCCGcgGCcucGGCCU-ACGCg -3'
miRNA:   3'- uaCCAGUuGCGGU--UGu--CCGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 217839 0.66 0.955446
Target:  5'- -cGGUUcggcagaGGCGgCAGCGGucuGCCCGGCGUg -3'
miRNA:   3'- uaCCAG-------UUGCgGUUGUC---CGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 208050 0.66 0.955063
Target:  5'- gGUGGUUuucuccacucucGCGCUuucuCGGGCCCGuCGCu -3'
miRNA:   3'- -UACCAGu-----------UGCGGuu--GUCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 151019 0.66 0.953511
Target:  5'- cAUGG-CGACGCgAGCcaccucgaggcggcGGCCCGucACGCg -3'
miRNA:   3'- -UACCaGUUGCGgUUGu-------------CCGGGU--UGCG- -5'
9387 3' -55.1 NC_002512.2 + 112917 0.66 0.951923
Target:  5'- -cGGaCGggGCGUCGGC-GGCCCGgugGCGCg -3'
miRNA:   3'- uaCCaGU--UGCGGUUGuCCGGGU---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.