miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 121148 0.72 0.735338
Target:  5'- -cGGccgaGACGCCGGCcgcGGCCCAGgGCg -3'
miRNA:   3'- uaCCag--UUGCGGUUGu--CCGGGUUgCG- -5'
9387 3' -55.1 NC_002512.2 + 157082 0.72 0.735338
Target:  5'- -gGGUCGccgGCGCCcacGGCGGGCCCGucccggcgACGUc -3'
miRNA:   3'- uaCCAGU---UGCGG---UUGUCCGGGU--------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 165407 0.72 0.735338
Target:  5'- cAUGGUCcaggAGgGCCGGCGGGCCUAcgagaucgGCGUc -3'
miRNA:   3'- -UACCAG----UUgCGGUUGUCCGGGU--------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 168769 0.71 0.763008
Target:  5'- cUGGUCGuugccguACGgCGACAGGUCCAG-GCa -3'
miRNA:   3'- uACCAGU-------UGCgGUUGUCCGGGUUgCG- -5'
9387 3' -55.1 NC_002512.2 + 216725 0.71 0.763946
Target:  5'- gGUGGaUCAugGCgcGCAGGUCCGcgaGCGCc -3'
miRNA:   3'- -UACC-AGUugCGguUGUCCGGGU---UGCG- -5'
9387 3' -55.1 NC_002512.2 + 3490 0.71 0.773266
Target:  5'- --cGUCGcCGCCGacuccugcgucGCAGGCCCA-CGCg -3'
miRNA:   3'- uacCAGUuGCGGU-----------UGUCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 114040 0.71 0.782461
Target:  5'- -cGGUgGACGUagagGGCGGGCCCGgaacagcgguagGCGCa -3'
miRNA:   3'- uaCCAgUUGCGg---UUGUCCGGGU------------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 188322 0.71 0.791525
Target:  5'- -aGGUCAagaaccugcGCGCCAccguGCAGGCCC-GCa- -3'
miRNA:   3'- uaCCAGU---------UGCGGU----UGUCCGGGuUGcg -5'
9387 3' -55.1 NC_002512.2 + 220651 0.71 0.791525
Target:  5'- uGUGGcgCgAGCGCCAcCuGGCCCGcCGCg -3'
miRNA:   3'- -UACCa-G-UUGCGGUuGuCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 145336 0.71 0.800449
Target:  5'- -aGGUCgAGCGCCucgccGCGccGCCCGACGCc -3'
miRNA:   3'- uaCCAG-UUGCGGu----UGUc-CGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 113683 0.7 0.805731
Target:  5'- -gGGUCGgacguugGCGCCGAagagcaucuuguagUGGGuCCCGACGCg -3'
miRNA:   3'- uaCCAGU-------UGCGGUU--------------GUCC-GGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 199438 0.7 0.809223
Target:  5'- --uGUaCGGCGCCAuggGCAGGCCC-GCGUu -3'
miRNA:   3'- uacCA-GUUGCGGU---UGUCCGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 133401 0.7 0.809223
Target:  5'- cGUGGgCGACGCCAugGcGCCCcGCGg -3'
miRNA:   3'- -UACCaGUUGCGGUugUcCGGGuUGCg -5'
9387 3' -55.1 NC_002512.2 + 193237 0.7 0.809223
Target:  5'- -gGGUCAACuGCCGACGgcGGUUCuACGCc -3'
miRNA:   3'- uaCCAGUUG-CGGUUGU--CCGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 208365 0.7 0.81784
Target:  5'- -aGGugcguuUCGACGaCgAGguGGCCCGACGCu -3'
miRNA:   3'- uaCC------AGUUGC-GgUUguCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 82401 0.7 0.81784
Target:  5'- -cGGUC-GCGCCcguccGCAGcGCCC-GCGCg -3'
miRNA:   3'- uaCCAGuUGCGGu----UGUC-CGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 219036 0.7 0.826292
Target:  5'- cUGGUCuACGUCGuc-GGCCgCGGCGCg -3'
miRNA:   3'- uACCAGuUGCGGUuguCCGG-GUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 132275 0.7 0.826292
Target:  5'- -aGGUCcgcCGCCAGCGGuGCugauugaaaaaCCAGCGCu -3'
miRNA:   3'- uaCCAGuu-GCGGUUGUC-CG-----------GGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 204958 0.7 0.826292
Target:  5'- -cGGUCGcUGCgGGCcGaGCCCGACGCc -3'
miRNA:   3'- uaCCAGUuGCGgUUGuC-CGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 88323 0.7 0.83293
Target:  5'- gAUGGUCAugGCCAugAGcgaggucaccccguaGUCCAccauggugcagauguGCGCg -3'
miRNA:   3'- -UACCAGUugCGGUugUC---------------CGGGU---------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.