miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 205645 0.84 0.199273
Target:  5'- -cGGggGACGCCGucgGCGGGCCCGACGCc -3'
miRNA:   3'- uaCCagUUGCGGU---UGUCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 94540 0.82 0.236197
Target:  5'- -cGGUCGACgGCCAGCAGcacCCCGGCGCg -3'
miRNA:   3'- uaCCAGUUG-CGGUUGUCc--GGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 171616 0.81 0.278688
Target:  5'- -aGGUCGuCGCCuuCGGGCCCGACaGCg -3'
miRNA:   3'- uaCCAGUuGCGGuuGUCCGGGUUG-CG- -5'
9387 3' -55.1 NC_002512.2 + 177120 0.81 0.291898
Target:  5'- -aGGUCcggguGCGCCAGCAGGgCCcGCGCg -3'
miRNA:   3'- uaCCAGu----UGCGGUUGUCCgGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 185207 0.79 0.373236
Target:  5'- -cGGUCGACGCCGcGguGGCCCGcgucguggaACGCg -3'
miRNA:   3'- uaCCAGUUGCGGU-UguCCGGGU---------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 99629 0.77 0.450352
Target:  5'- -cGGUCGuCGCCcucggaGGGCCCGGCGCc -3'
miRNA:   3'- uaCCAGUuGCGGuug---UCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 114172 0.76 0.515971
Target:  5'- -cGGUCcuccucgguGGCGCCGGCgucGGGCCCGGCGg -3'
miRNA:   3'- uaCCAG---------UUGCGGUUG---UCCGGGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 208282 0.75 0.544285
Target:  5'- cAUGGUCAACGCCGAgGGGCgcuuucCCGucugcgacaugaaGCGCc -3'
miRNA:   3'- -UACCAGUUGCGGUUgUCCG------GGU-------------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 204711 0.75 0.545271
Target:  5'- --cGUCGGCGaCGGCGGGCCCGGgGCg -3'
miRNA:   3'- uacCAGUUGCgGUUGUCCGGGUUgCG- -5'
9387 3' -55.1 NC_002512.2 + 203560 0.74 0.595173
Target:  5'- -cGcGUCccuCGCCAccgACAGGCCCAGCGa -3'
miRNA:   3'- uaC-CAGuu-GCGGU---UGUCCGGGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 98757 0.74 0.645726
Target:  5'- -gGGUUgacgaagacgGGCGCCGagaaGguGGCCCGGCGCa -3'
miRNA:   3'- uaCCAG----------UUGCGGU----UguCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 122106 0.73 0.665927
Target:  5'- -aGGUCGGCGCUGACGucGGCC--GCGCu -3'
miRNA:   3'- uaCCAGUUGCGGUUGU--CCGGguUGCG- -5'
9387 3' -55.1 NC_002512.2 + 102915 0.73 0.665927
Target:  5'- -cGGUCGACgGCC-ACGGGCCCcagguCGUa -3'
miRNA:   3'- uaCCAGUUG-CGGuUGUCCGGGuu---GCG- -5'
9387 3' -55.1 NC_002512.2 + 90277 0.73 0.665927
Target:  5'- gAUGGUCcugaccuGCGCgGAcCGGGCCCGauugaGCGCg -3'
miRNA:   3'- -UACCAGu------UGCGgUU-GUCCGGGU-----UGCG- -5'
9387 3' -55.1 NC_002512.2 + 149162 0.73 0.665927
Target:  5'- -gGGcCggUGCCGcccGCGGGCCC-GCGCg -3'
miRNA:   3'- uaCCaGuuGCGGU---UGUCCGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 157136 0.73 0.675991
Target:  5'- -gGGUCGGCG---GCGGGCCCGGgGCg -3'
miRNA:   3'- uaCCAGUUGCgguUGUCCGGGUUgCG- -5'
9387 3' -55.1 NC_002512.2 + 107068 0.72 0.705939
Target:  5'- -cGGUCGACGCgCuggacguagggGACccgccgccaGGGCCCGGCGCc -3'
miRNA:   3'- uaCCAGUUGCG-G-----------UUG---------UCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 208579 0.72 0.715812
Target:  5'- -cGaGUCGACGCgCAGCGGGUCCGggACGa -3'
miRNA:   3'- uaC-CAGUUGCG-GUUGUCCGGGU--UGCg -5'
9387 3' -55.1 NC_002512.2 + 224823 0.72 0.715812
Target:  5'- ----cCAACGCCGcggGCGGGCUgGACGCg -3'
miRNA:   3'- uaccaGUUGCGGU---UGUCCGGgUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 91090 0.72 0.715812
Target:  5'- -cGGUUcguGCGCgAggaggACGGGCCCGugGCg -3'
miRNA:   3'- uaCCAGu--UGCGgU-----UGUCCGGGUugCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.