miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 3490 0.71 0.773266
Target:  5'- --cGUCGcCGCCGacuccugcgucGCAGGCCCA-CGCg -3'
miRNA:   3'- uacCAGUuGCGGU-----------UGUCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 41136 0.66 0.955826
Target:  5'- gAUGG-CAACuCCGcACGGGCCCGgauACGg -3'
miRNA:   3'- -UACCaGUUGcGGU-UGUCCGGGU---UGCg -5'
9387 3' -55.1 NC_002512.2 + 51314 0.66 0.962973
Target:  5'- uUGGcCAAUGCCAuCAuGGCCU-GCGUg -3'
miRNA:   3'- uACCaGUUGCGGUuGU-CCGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 59475 0.66 0.966227
Target:  5'- -aGGcCcuCGCCAGCGGGUCUcgAGCGg -3'
miRNA:   3'- uaCCaGuuGCGGUUGUCCGGG--UUGCg -5'
9387 3' -55.1 NC_002512.2 + 70328 0.66 0.969273
Target:  5'- --cGUCAACaagGCCGAUcccGGCCCAucguCGCg -3'
miRNA:   3'- uacCAGUUG---CGGUUGu--CCGGGUu---GCG- -5'
9387 3' -55.1 NC_002512.2 + 74409 0.68 0.908861
Target:  5'- -cGGcCAugGCCGucucuucuucgaccgACGGuCCCGGCGCg -3'
miRNA:   3'- uaCCaGUugCGGU---------------UGUCcGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 74641 0.68 0.917612
Target:  5'- --cGUCGACGCCGcgACGGGCgggacggCCGcggGCGCg -3'
miRNA:   3'- uacCAGUUGCGGU--UGUCCG-------GGU---UGCG- -5'
9387 3' -55.1 NC_002512.2 + 74698 0.69 0.873132
Target:  5'- -cGGUCGGaucuCGCaGACGGGCUuCGGCGCg -3'
miRNA:   3'- uaCCAGUU----GCGgUUGUCCGG-GUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 75513 0.66 0.965911
Target:  5'- -cGGauuacccUCGACGUUGACGGGCaCCcucGACGCc -3'
miRNA:   3'- uaCC-------AGUUGCGGUUGUCCG-GG---UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 76165 0.67 0.938852
Target:  5'- -cGGaCAGCGCCGugAGaCCCGAC-Ca -3'
miRNA:   3'- uaCCaGUUGCGGUugUCcGGGUUGcG- -5'
9387 3' -55.1 NC_002512.2 + 82266 0.67 0.928982
Target:  5'- -aGGaUCGcACGCCAgcgACAGGUCCGcCGUc -3'
miRNA:   3'- uaCC-AGU-UGCGGU---UGUCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 82401 0.7 0.81784
Target:  5'- -cGGUC-GCGCCcguccGCAGcGCCC-GCGCg -3'
miRNA:   3'- uaCCAGuUGCGGu----UGUC-CGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 87611 0.66 0.969273
Target:  5'- --cGUCGACGCCGuccCcGGCCCGgACGa -3'
miRNA:   3'- uacCAGUUGCGGUu--GuCCGGGU-UGCg -5'
9387 3' -55.1 NC_002512.2 + 87978 0.67 0.947794
Target:  5'- --cGUCGGgGCC-GCGGcGCCCcGACGCg -3'
miRNA:   3'- uacCAGUUgCGGuUGUC-CGGG-UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 88323 0.7 0.83293
Target:  5'- gAUGGUCAugGCCAugAGcgaggucaccccguaGUCCAccauggugcagauguGCGCg -3'
miRNA:   3'- -UACCAGUugCGGUugUC---------------CGGGU---------------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 89443 0.67 0.928982
Target:  5'- -gGGUC-ACGUC--CGGGCCCAugGa -3'
miRNA:   3'- uaCCAGuUGCGGuuGUCCGGGUugCg -5'
9387 3' -55.1 NC_002512.2 + 90277 0.73 0.665927
Target:  5'- gAUGGUCcugaccuGCGCgGAcCGGGCCCGauugaGCGCg -3'
miRNA:   3'- -UACCAGu------UGCGgUU-GUCCGGGU-----UGCG- -5'
9387 3' -55.1 NC_002512.2 + 91090 0.72 0.715812
Target:  5'- -cGGUUcguGCGCgAggaggACGGGCCCGugGCg -3'
miRNA:   3'- uaCCAGu--UGCGgU-----UGUCCGGGUugCG- -5'
9387 3' -55.1 NC_002512.2 + 91895 0.69 0.887119
Target:  5'- -cGGcgCGGCGCaCGGCccgcucGGGCCCGgcACGCa -3'
miRNA:   3'- uaCCa-GUUGCG-GUUG------UCCGGGU--UGCG- -5'
9387 3' -55.1 NC_002512.2 + 92557 0.66 0.955826
Target:  5'- -cGGcgaCGACGUCGG-AGGCgCCGACGCc -3'
miRNA:   3'- uaCCa--GUUGCGGUUgUCCG-GGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.