miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 228216 0.66 0.968977
Target:  5'- -cGGUCGAgGCCGggcgagacgGCGGgaagggcgaacguGCCgGACGCg -3'
miRNA:   3'- uaCCAGUUgCGGU---------UGUC-------------CGGgUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 228130 0.68 0.90644
Target:  5'- cGUGcUgGGCGCCGACGGGCgCGagcucagguccACGCg -3'
miRNA:   3'- -UACcAgUUGCGGUUGUCCGgGU-----------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 225434 0.68 0.923696
Target:  5'- -gGGcCGACGCCGACccccGcGCCCGGCa- -3'
miRNA:   3'- uaCCaGUUGCGGUUGu---C-CGGGUUGcg -5'
9387 3' -55.1 NC_002512.2 + 225221 0.69 0.880234
Target:  5'- cUGGgcuUCGacGCGCCGGCGGGgCCucCGCu -3'
miRNA:   3'- uACC---AGU--UGCGGUUGUCCgGGuuGCG- -5'
9387 3' -55.1 NC_002512.2 + 224823 0.72 0.715812
Target:  5'- ----cCAACGCCGcggGCGGGCUgGACGCg -3'
miRNA:   3'- uaccaGUUGCGGU---UGUCCGGgUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 224631 0.66 0.955826
Target:  5'- -gGGUCGcCGCCGcgGCcucGGCCU-ACGCg -3'
miRNA:   3'- uaCCAGUuGCGGU--UGu--CCGGGuUGCG- -5'
9387 3' -55.1 NC_002512.2 + 221907 0.68 0.900226
Target:  5'- -gGGaUCgGGCGCCAGCGcgcgauGGCCUggUGCg -3'
miRNA:   3'- uaCC-AG-UUGCGGUUGU------CCGGGuuGCG- -5'
9387 3' -55.1 NC_002512.2 + 220763 0.67 0.928982
Target:  5'- --cGUCGAgGCCGACgucGGGUCCAugGa -3'
miRNA:   3'- uacCAGUUgCGGUUG---UCCGGGUugCg -5'
9387 3' -55.1 NC_002512.2 + 220651 0.71 0.791525
Target:  5'- uGUGGcgCgAGCGCCAcCuGGCCCGcCGCg -3'
miRNA:   3'- -UACCa-G-UUGCGGUuGuCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 219325 0.66 0.962973
Target:  5'- -gGGagAGCGUCGGCGuGGCCCGcCGg -3'
miRNA:   3'- uaCCagUUGCGGUUGU-CCGGGUuGCg -5'
9387 3' -55.1 NC_002512.2 + 219036 0.7 0.826292
Target:  5'- cUGGUCuACGUCGuc-GGCCgCGGCGCg -3'
miRNA:   3'- uACCAGuUGCGGUuguCCGG-GUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 217839 0.66 0.955446
Target:  5'- -cGGUUcggcagaGGCGgCAGCGGucuGCCCGGCGUg -3'
miRNA:   3'- uaCCAG-------UUGCgGUUGUC---CGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 217621 0.67 0.943438
Target:  5'- -cGGgCGGCGCC-ACGGGUCUcgUGCu -3'
miRNA:   3'- uaCCaGUUGCGGuUGUCCGGGuuGCG- -5'
9387 3' -55.1 NC_002512.2 + 217131 0.67 0.943438
Target:  5'- -cGG-CGGCaG-CAGCGGGCCCAgcuuGCGCc -3'
miRNA:   3'- uaCCaGUUG-CgGUUGUCCGGGU----UGCG- -5'
9387 3' -55.1 NC_002512.2 + 216725 0.71 0.763946
Target:  5'- gGUGGaUCAugGCgcGCAGGUCCGcgaGCGCc -3'
miRNA:   3'- -UACC-AGUugCGguUGUCCGGGU---UGCG- -5'
9387 3' -55.1 NC_002512.2 + 212130 0.66 0.964951
Target:  5'- cUGGUCcccuaucaccuguGCGUCGGCGGGCaCUGGCGg -3'
miRNA:   3'- uACCAGu------------UGCGGUUGUCCG-GGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 208579 0.72 0.715812
Target:  5'- -cGaGUCGACGCgCAGCGGGUCCGggACGa -3'
miRNA:   3'- uaC-CAGUUGCG-GUUGUCCGGGU--UGCg -5'
9387 3' -55.1 NC_002512.2 + 208365 0.7 0.81784
Target:  5'- -aGGugcguuUCGACGaCgAGguGGCCCGACGCu -3'
miRNA:   3'- uaCC------AGUUGC-GgUUguCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 208282 0.75 0.544285
Target:  5'- cAUGGUCAACGCCGAgGGGCgcuuucCCGucugcgacaugaaGCGCc -3'
miRNA:   3'- -UACCAGUUGCGGUUgUCCG------GGU-------------UGCG- -5'
9387 3' -55.1 NC_002512.2 + 208050 0.66 0.955063
Target:  5'- gGUGGUUuucuccacucucGCGCUuucuCGGGCCCGuCGCu -3'
miRNA:   3'- -UACCAGu-----------UGCGGuu--GUCCGGGUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.