miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 94540 0.82 0.236197
Target:  5'- -cGGUCGACgGCCAGCAGcacCCCGGCGCg -3'
miRNA:   3'- uaCCAGUUG-CGGUUGUCc--GGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 98757 0.74 0.645726
Target:  5'- -gGGUUgacgaagacgGGCGCCGagaaGguGGCCCGGCGCa -3'
miRNA:   3'- uaCCAG----------UUGCGGU----UguCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 98839 0.69 0.86582
Target:  5'- -cGGcgCGGCGCCGuccucccccGCGGcCCCGACGCc -3'
miRNA:   3'- uaCCa-GUUGCGGU---------UGUCcGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 99629 0.77 0.450352
Target:  5'- -cGGUCGuCGCCcucggaGGGCCCGGCGCc -3'
miRNA:   3'- uaCCAGUuGCGGuug---UCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 100319 0.68 0.893784
Target:  5'- -aGGUCGGCcacgGCCuccCGGGCCUcgucGACGCc -3'
miRNA:   3'- uaCCAGUUG----CGGuu-GUCCGGG----UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 100593 0.69 0.873132
Target:  5'- gGUGGggaaaCcGCGCCcGC-GGCUCGACGCa -3'
miRNA:   3'- -UACCa----GuUGCGGuUGuCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 101696 0.67 0.943438
Target:  5'- -cGGUCc-CGCCGGC-GGCCCGcucgGCGa -3'
miRNA:   3'- uaCCAGuuGCGGUUGuCCGGGU----UGCg -5'
9387 3' -55.1 NC_002512.2 + 101900 0.67 0.938852
Target:  5'- -cGGg-GACGCCGACGGGggCGGCGUg -3'
miRNA:   3'- uaCCagUUGCGGUUGUCCggGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 102915 0.73 0.665927
Target:  5'- -cGGUCGACgGCC-ACGGGCCCcagguCGUa -3'
miRNA:   3'- uaCCAGUUG-CGGuUGUCCGGGuu---GCG- -5'
9387 3' -55.1 NC_002512.2 + 103573 0.69 0.86582
Target:  5'- cGUGGggagaCGACGCCucGCAGGCCacgAGgGCg -3'
miRNA:   3'- -UACCa----GUUGCGGu-UGUCCGGg--UUgCG- -5'
9387 3' -55.1 NC_002512.2 + 104147 0.67 0.943438
Target:  5'- cUGGgggacgCGACGCCgGACAGGaa-GGCGCg -3'
miRNA:   3'- uACCa-----GUUGCGG-UUGUCCgggUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 107068 0.72 0.705939
Target:  5'- -cGGUCGACGCgCuggacguagggGACccgccgccaGGGCCCGGCGCc -3'
miRNA:   3'- uaCCAGUUGCG-G-----------UUG---------UCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 108493 0.7 0.842671
Target:  5'- -cGGUCGucaaGgGCgAGgcCGGGCCCGGCGCc -3'
miRNA:   3'- uaCCAGU----UgCGgUU--GUCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 110782 0.7 0.834571
Target:  5'- -cGGUacaCGACGCCcacCAGGUCCGcCGCg -3'
miRNA:   3'- uaCCA---GUUGCGGuu-GUCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 111930 0.66 0.969273
Target:  5'- -cGGggAGCGuCCAcGCAGGCCUgaucGACGUa -3'
miRNA:   3'- uaCCagUUGC-GGU-UGUCCGGG----UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 112155 0.69 0.880234
Target:  5'- -cGGUCGACggcgaGCCGGCGcucGaGCCCGcACGCg -3'
miRNA:   3'- uaCCAGUUG-----CGGUUGU---C-CGGGU-UGCG- -5'
9387 3' -55.1 NC_002512.2 + 112917 0.66 0.951923
Target:  5'- -cGGaCGggGCGUCGGC-GGCCCGgugGCGCg -3'
miRNA:   3'- uaCCaGU--UGCGGUUGuCCGGGU---UGCG- -5'
9387 3' -55.1 NC_002512.2 + 113081 0.67 0.928982
Target:  5'- -cGGUCGACGaugcgcacguaCUGACGGGCggCGACGCu -3'
miRNA:   3'- uaCCAGUUGC-----------GGUUGUCCGg-GUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 113683 0.7 0.805731
Target:  5'- -gGGUCGgacguugGCGCCGAagagcaucuuguagUGGGuCCCGACGCg -3'
miRNA:   3'- uaCCAGU-------UGCGGUU--------------GUCC-GGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 113939 0.66 0.969273
Target:  5'- -cGGcCAGCGagAGCAGGCCgcggaaGACGUg -3'
miRNA:   3'- uaCCaGUUGCggUUGUCCGGg-----UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.