miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 5' -59.8 NC_002512.2 + 227082 0.78 0.267241
Target:  5'- cGCGCcgGGUCCCgCcgGCCGCCGgCCGGGUCg -3'
miRNA:   3'- -CGCG--CUAGGG-G--UGGUGGCaGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 96092 0.77 0.292019
Target:  5'- gGCGCGAccgucgUCCCCGCCGCCG-CCGucGUCg -3'
miRNA:   3'- -CGCGCU------AGGGGUGGUGGCaGGUc-CAG- -5'
9387 5' -59.8 NC_002512.2 + 99196 0.77 0.305067
Target:  5'- gGCgGCGggCCCCACCAcgagcagcCCGUCCcGGUCc -3'
miRNA:   3'- -CG-CGCuaGGGGUGGU--------GGCAGGuCCAG- -5'
9387 5' -59.8 NC_002512.2 + 191629 0.76 0.318558
Target:  5'- cGCGCGAUCCCuCGCCcgAUCGgagCCAGGa- -3'
miRNA:   3'- -CGCGCUAGGG-GUGG--UGGCa--GGUCCag -5'
9387 5' -59.8 NC_002512.2 + 110767 0.75 0.392613
Target:  5'- gGCGUGAUCCCgCGCCgguacacgacGCCcaCCAGGUCc -3'
miRNA:   3'- -CGCGCUAGGG-GUGG----------UGGcaGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 125104 0.75 0.392613
Target:  5'- cGCGCGGaCCCCGCCgacgcGCCGUCCgaccGGGa- -3'
miRNA:   3'- -CGCGCUaGGGGUGG-----UGGCAGG----UCCag -5'
9387 5' -59.8 NC_002512.2 + 102911 0.74 0.400609
Target:  5'- gGCGCGGUCgaCgGCCACgGgccCCAGGUCg -3'
miRNA:   3'- -CGCGCUAGg-GgUGGUGgCa--GGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 198143 0.74 0.408709
Target:  5'- aGCGCGAgCCCCG-CGCgGgCCGGGUCg -3'
miRNA:   3'- -CGCGCUaGGGGUgGUGgCaGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 206784 0.74 0.408709
Target:  5'- aGCGCGAUCaUCCGCaCGCCGaacUCCGGGaUCc -3'
miRNA:   3'- -CGCGCUAG-GGGUG-GUGGC---AGGUCC-AG- -5'
9387 5' -59.8 NC_002512.2 + 125036 0.74 0.416909
Target:  5'- uGCGCGAggucccUCCCCGCCGCUccagCCGGGa- -3'
miRNA:   3'- -CGCGCU------AGGGGUGGUGGca--GGUCCag -5'
9387 5' -59.8 NC_002512.2 + 176613 0.74 0.416909
Target:  5'- cGUGuCGAUCUCCACC-CCGUCgGGGg- -3'
miRNA:   3'- -CGC-GCUAGGGGUGGuGGCAGgUCCag -5'
9387 5' -59.8 NC_002512.2 + 176548 0.73 0.476983
Target:  5'- aGgGUGGUCUCCGCCGCCGUCaccagccGGUUc -3'
miRNA:   3'- -CgCGCUAGGGGUGGUGGCAGgu-----CCAG- -5'
9387 5' -59.8 NC_002512.2 + 211039 0.72 0.504016
Target:  5'- uGCGCGGccgucCCCCGCUACCuccgcucgcucGUCCAGGa- -3'
miRNA:   3'- -CGCGCUa----GGGGUGGUGG-----------CAGGUCCag -5'
9387 5' -59.8 NC_002512.2 + 175202 0.72 0.504016
Target:  5'- cGCGCGuucAUCgCCGcguCCACCGUCCGccGGUCc -3'
miRNA:   3'- -CGCGC---UAGgGGU---GGUGGCAGGU--CCAG- -5'
9387 5' -59.8 NC_002512.2 + 224568 0.72 0.513174
Target:  5'- --uCGAUCCCCACCGCgGcuacCCGGGUUa -3'
miRNA:   3'- cgcGCUAGGGGUGGUGgCa---GGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 183154 0.72 0.5224
Target:  5'- cGCGCGcuUCCCCGCCGCCGccgCCAu--- -3'
miRNA:   3'- -CGCGCu-AGGGGUGGUGGCa--GGUccag -5'
9387 5' -59.8 NC_002512.2 + 217484 0.72 0.526109
Target:  5'- uCGCGAUCCcggcgccgCCGCCGCCGcCCgaaggcgagcucgggGGGUCg -3'
miRNA:   3'- cGCGCUAGG--------GGUGGUGGCaGG---------------UCCAG- -5'
9387 5' -59.8 NC_002512.2 + 192699 0.72 0.538228
Target:  5'- cGCGcCGAggccgucuucuacuUCUCCGCCGCCGUCguGGcCu -3'
miRNA:   3'- -CGC-GCU--------------AGGGGUGGUGGCAGguCCaG- -5'
9387 5' -59.8 NC_002512.2 + 148980 0.71 0.569391
Target:  5'- cGCGCGA-CCCaccaccugaACCACCGgCCGGGg- -3'
miRNA:   3'- -CGCGCUaGGGg--------UGGUGGCaGGUCCag -5'
9387 5' -59.8 NC_002512.2 + 184682 0.71 0.569391
Target:  5'- -gGCGGccgUCCgCGCCGCCGgUCCcGGUCg -3'
miRNA:   3'- cgCGCU---AGGgGUGGUGGC-AGGuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.