miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 5' -59.8 NC_002512.2 + 5338 0.67 0.802766
Target:  5'- cGC-CGAaucCCCCGCgACCGUCaucGGUCu -3'
miRNA:   3'- -CGcGCUa--GGGGUGgUGGCAGgu-CCAG- -5'
9387 5' -59.8 NC_002512.2 + 28189 0.66 0.842902
Target:  5'- --uCGAUCCCCcacACCACC-UCC-GGUCc -3'
miRNA:   3'- cgcGCUAGGGG---UGGUGGcAGGuCCAG- -5'
9387 5' -59.8 NC_002512.2 + 33088 0.66 0.864994
Target:  5'- cGCGCGGUCaucgggaCCAuaucUCGCUGUCCGcGUCc -3'
miRNA:   3'- -CGCGCUAGg------GGU----GGUGGCAGGUcCAG- -5'
9387 5' -59.8 NC_002512.2 + 73049 0.68 0.773462
Target:  5'- aCGUGAUCggcuucgaguuauuCCCACCgguuaugGCCGUCCuGGUUc -3'
miRNA:   3'- cGCGCUAG--------------GGGUGG-------UGGCAGGuCCAG- -5'
9387 5' -59.8 NC_002512.2 + 87825 0.67 0.794299
Target:  5'- -aGCGAUCCCC-CgGCCGggcgUCGGGcCc -3'
miRNA:   3'- cgCGCUAGGGGuGgUGGCa---GGUCCaG- -5'
9387 5' -59.8 NC_002512.2 + 89863 0.68 0.767258
Target:  5'- cGUGCGGugaucguaguggcUCUCCAgCGCCucgGUCUGGGUCg -3'
miRNA:   3'- -CGCGCU-------------AGGGGUgGUGG---CAGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 90637 0.68 0.776983
Target:  5'- gGCGCGA-CCCggCGCCGCgG-CCGcGGUCu -3'
miRNA:   3'- -CGCGCUaGGG--GUGGUGgCaGGU-CCAG- -5'
9387 5' -59.8 NC_002512.2 + 92828 0.7 0.626999
Target:  5'- gGCGCGGcgccUCCUC-CCugGCCGUCCccGGUCg -3'
miRNA:   3'- -CGCGCU----AGGGGuGG--UGGCAGGu-CCAG- -5'
9387 5' -59.8 NC_002512.2 + 94738 0.66 0.83519
Target:  5'- -gGCGAaCCCCGCC-CgGUCgCAGG-Cg -3'
miRNA:   3'- cgCGCUaGGGGUGGuGgCAG-GUCCaG- -5'
9387 5' -59.8 NC_002512.2 + 96092 0.77 0.292019
Target:  5'- gGCGCGAccgucgUCCCCGCCGCCG-CCGucGUCg -3'
miRNA:   3'- -CGCGCU------AGGGGUGGUGGCaGGUc-CAG- -5'
9387 5' -59.8 NC_002512.2 + 96481 0.69 0.722513
Target:  5'- cGCGCGGccgucUCgCCCuCCAUgGUCCGGG-Cg -3'
miRNA:   3'- -CGCGCU-----AG-GGGuGGUGgCAGGUCCaG- -5'
9387 5' -59.8 NC_002512.2 + 99196 0.77 0.305067
Target:  5'- gGCgGCGggCCCCACCAcgagcagcCCGUCCcGGUCc -3'
miRNA:   3'- -CG-CGCuaGGGGUGGU--------GGCAGGuCCAG- -5'
9387 5' -59.8 NC_002512.2 + 100018 0.71 0.588497
Target:  5'- -gGCGAaucCCCCGCCGCCGUCCu---- -3'
miRNA:   3'- cgCGCUa--GGGGUGGUGGCAGGuccag -5'
9387 5' -59.8 NC_002512.2 + 102673 0.66 0.857809
Target:  5'- aGgGCGG-CCgC-CCGCUGUCCGGGg- -3'
miRNA:   3'- -CgCGCUaGGgGuGGUGGCAGGUCCag -5'
9387 5' -59.8 NC_002512.2 + 102911 0.74 0.400609
Target:  5'- gGCGCGGUCgaCgGCCACgGgccCCAGGUCg -3'
miRNA:   3'- -CGCGCUAGg-GgUGGUGgCa--GGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 107869 0.7 0.626999
Target:  5'- aGCGcCGAUCCgCCGCCuCCGgccccUCCGGG-Cg -3'
miRNA:   3'- -CGC-GCUAGG-GGUGGuGGC-----AGGUCCaG- -5'
9387 5' -59.8 NC_002512.2 + 108016 0.68 0.741028
Target:  5'- cCGCGAccUCCCCcucggauccGCCGCCGUCCuccccgccGUCc -3'
miRNA:   3'- cGCGCU--AGGGG---------UGGUGGCAGGuc------CAG- -5'
9387 5' -59.8 NC_002512.2 + 108107 0.71 0.588497
Target:  5'- -gGCG-UCCCCGCCucgGCgGUCCGcGGUCc -3'
miRNA:   3'- cgCGCuAGGGGUGG---UGgCAGGU-CCAG- -5'
9387 5' -59.8 NC_002512.2 + 110767 0.75 0.392613
Target:  5'- gGCGUGAUCCCgCGCCgguacacgacGCCcaCCAGGUCc -3'
miRNA:   3'- -CGCGCUAGGG-GUGG----------UGGcaGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 111797 0.7 0.665554
Target:  5'- cGCGCGGUCgCCGCCGgCG-CCGGaGcCg -3'
miRNA:   3'- -CGCGCUAGgGGUGGUgGCaGGUC-CaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.