miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9388 5' -52.9 NC_002512.2 + 99415 0.76 0.695432
Target:  5'- aUCGGGccccGACCGACCCAg--GACGCu -3'
miRNA:   3'- cAGCCUaa--CUGGCUGGGUugaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 192582 0.75 0.715174
Target:  5'- cUCGGAgcgGACCGuCCCGcuGCUGcgGCGCg -3'
miRNA:   3'- cAGCCUaa-CUGGCuGGGU--UGAC--UGCG- -5'
9388 5' -52.9 NC_002512.2 + 78252 0.75 0.734641
Target:  5'- cUCGGAgacgcGAUCGGCCCucCUGACGUu -3'
miRNA:   3'- cAGCCUaa---CUGGCUGGGuuGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 225424 0.75 0.763171
Target:  5'- gGUCGGGUUGggGCCGACgCCGACccccGCGCc -3'
miRNA:   3'- -CAGCCUAAC--UGGCUG-GGUUGac--UGCG- -5'
9388 5' -52.9 NC_002512.2 + 172405 0.74 0.772466
Target:  5'- -cCGGGaUGACCG-CCCGGCUGGaGCa -3'
miRNA:   3'- caGCCUaACUGGCuGGGUUGACUgCG- -5'
9388 5' -52.9 NC_002512.2 + 213724 0.74 0.790684
Target:  5'- cGUCGGAgcugacgacgUUGACCGACCgGGCgcagGcCGCc -3'
miRNA:   3'- -CAGCCU----------AACUGGCUGGgUUGa---CuGCG- -5'
9388 5' -52.9 NC_002512.2 + 102871 0.72 0.854307
Target:  5'- uGUCGGAgaaacgcgcccgGACCGACuCCAccgugcgcCUGGCGCg -3'
miRNA:   3'- -CAGCCUaa----------CUGGCUG-GGUu-------GACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 147709 0.72 0.857369
Target:  5'- -gCGGAcgGGCucuCGACCCucCUGACGCu -3'
miRNA:   3'- caGCCUaaCUG---GCUGGGuuGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 34069 0.72 0.872198
Target:  5'- -aCGGGUUGACCGAgaaUgGACcGGCGCg -3'
miRNA:   3'- caGCCUAACUGGCUg--GgUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 208462 0.72 0.886192
Target:  5'- cGUCGGGaUGGCgGACUaCGAC-GACGCg -3'
miRNA:   3'- -CAGCCUaACUGgCUGG-GUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 109140 0.72 0.886192
Target:  5'- cGUCGGAcucGACCG-CCCGgcuGCUGAgGUg -3'
miRNA:   3'- -CAGCCUaa-CUGGCuGGGU---UGACUgCG- -5'
9388 5' -52.9 NC_002512.2 + 219838 0.71 0.899314
Target:  5'- gGUCGGGggGuCCGGCCCGgggGCgGAuCGCg -3'
miRNA:   3'- -CAGCCUaaCuGGCUGGGU---UGaCU-GCG- -5'
9388 5' -52.9 NC_002512.2 + 214972 0.7 0.928143
Target:  5'- -cCGGAUccaGACCGACgCCGACcucggGAUGCc -3'
miRNA:   3'- caGCCUAa--CUGGCUG-GGUUGa----CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 161026 0.7 0.933215
Target:  5'- cGUUGGAgugUGG-CGACCCGcuccuGCgGACGCa -3'
miRNA:   3'- -CAGCCUa--ACUgGCUGGGU-----UGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 220944 0.7 0.938055
Target:  5'- cGUCGGAacGcgcucuucaucGCCGACCCGGCcGAgGCc -3'
miRNA:   3'- -CAGCCUaaC-----------UGGCUGGGUUGaCUgCG- -5'
9388 5' -52.9 NC_002512.2 + 212439 0.7 0.938055
Target:  5'- uUCGGGccGGCCGGCCgCGACcGcCGCg -3'
miRNA:   3'- cAGCCUaaCUGGCUGG-GUUGaCuGCG- -5'
9388 5' -52.9 NC_002512.2 + 146765 0.7 0.938055
Target:  5'- -aCGGg--GACgaCGACCCGACcGACGCc -3'
miRNA:   3'- caGCCuaaCUG--GCUGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 196360 0.7 0.942664
Target:  5'- gGUCGGAggcuccGCCGGCCgGGCUcacuucggGACGCc -3'
miRNA:   3'- -CAGCCUaac---UGGCUGGgUUGA--------CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 223188 0.69 0.958837
Target:  5'- -gUGGAcgGGCCG-CCCGACgggGACGg -3'
miRNA:   3'- caGCCUaaCUGGCuGGGUUGa--CUGCg -5'
9388 5' -52.9 NC_002512.2 + 184391 0.69 0.96233
Target:  5'- uUCGGcgUGGCCGcCgCCGGggGGCGCu -3'
miRNA:   3'- cAGCCuaACUGGCuG-GGUUgaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.