miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9388 5' -52.9 NC_002512.2 + 34069 0.72 0.872198
Target:  5'- -aCGGGUUGACCGAgaaUgGACcGGCGCg -3'
miRNA:   3'- caGCCUAACUGGCUg--GgUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 72728 0.68 0.981177
Target:  5'- aUCGcaGAggGACCGAUCCGACcGaaaGCGCa -3'
miRNA:   3'- cAGC--CUaaCUGGCUGGGUUGaC---UGCG- -5'
9388 5' -52.9 NC_002512.2 + 72815 0.68 0.971562
Target:  5'- -cUGGAagUGACCGACgauuuucuauuCCAACUGGUGCu -3'
miRNA:   3'- caGCCUa-ACUGGCUG-----------GGUUGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 78252 0.75 0.734641
Target:  5'- cUCGGAgacgcGAUCGGCCCucCUGACGUu -3'
miRNA:   3'- cAGCCUaa---CUGGCUGGGuuGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 82124 0.66 0.993809
Target:  5'- aGUCGGGa----CGGCCgcGCUGGCGCa -3'
miRNA:   3'- -CAGCCUaacugGCUGGguUGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 99415 0.76 0.695432
Target:  5'- aUCGGGccccGACCGACCCAg--GACGCu -3'
miRNA:   3'- cAGCCUaa--CUGGCUGGGUugaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 100589 0.68 0.968687
Target:  5'- cUCGGGUgggGAaaCCGcGCCCGcgGCUcGACGCa -3'
miRNA:   3'- cAGCCUAa--CU--GGC-UGGGU--UGA-CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 102871 0.72 0.854307
Target:  5'- uGUCGGAgaaacgcgcccgGACCGACuCCAccgugcgcCUGGCGCg -3'
miRNA:   3'- -CAGCCUaa----------CUGGCUG-GGUu-------GACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 105135 0.66 0.991879
Target:  5'- cGUCGuc---GCCGcACCCGACgGACGCc -3'
miRNA:   3'- -CAGCcuaacUGGC-UGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 105376 0.68 0.979042
Target:  5'- --gGGGUUcaGACCcaucGACCCGGC-GACGCu -3'
miRNA:   3'- cagCCUAA--CUGG----CUGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 109140 0.72 0.886192
Target:  5'- cGUCGGAcucGACCG-CCCGgcuGCUGAgGUg -3'
miRNA:   3'- -CAGCCUaa-CUGGCuGGGU---UGACUgCG- -5'
9388 5' -52.9 NC_002512.2 + 115445 0.69 0.965612
Target:  5'- -gCGGAcUUcGCCGAUcacgcgaaCCGGCUGGCGCa -3'
miRNA:   3'- caGCCU-AAcUGGCUG--------GGUUGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 126523 0.67 0.9895
Target:  5'- gGUCGGAcgacccGACCGcgGCCCcgGACUcgucGACGCc -3'
miRNA:   3'- -CAGCCUaa----CUGGC--UGGG--UUGA----CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 143696 0.68 0.981177
Target:  5'- uGUCGGGcacggagGGCCGACcuCCAGCUccCGCa -3'
miRNA:   3'- -CAGCCUaa-----CUGGCUG--GGUUGAcuGCG- -5'
9388 5' -52.9 NC_002512.2 + 145882 0.66 0.994625
Target:  5'- cGUCGGc--GACCugGACCUgaAGCUG-CGCg -3'
miRNA:   3'- -CAGCCuaaCUGG--CUGGG--UUGACuGCG- -5'
9388 5' -52.9 NC_002512.2 + 146765 0.7 0.938055
Target:  5'- -aCGGg--GACgaCGACCCGACcGACGCc -3'
miRNA:   3'- caGCCuaaCUG--GCUGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 147709 0.72 0.857369
Target:  5'- -gCGGAcgGGCucuCGACCCucCUGACGCu -3'
miRNA:   3'- caGCCUaaCUG---GCUGGGuuGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 150765 0.68 0.974241
Target:  5'- -cCGuGAUUGacgGCCGACUCGGCggUGACGUc -3'
miRNA:   3'- caGC-CUAAC---UGGCUGGGUUG--ACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 151232 0.66 0.991879
Target:  5'- -cCGGc---GCCGGCUCGACcGACGCc -3'
miRNA:   3'- caGCCuaacUGGCUGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 161026 0.7 0.933215
Target:  5'- cGUUGGAgugUGG-CGACCCGcuccuGCgGACGCa -3'
miRNA:   3'- -CAGCCUa--ACUgGCUGGGU-----UGaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.