miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9388 5' -52.9 NC_002512.2 + 165569 0.67 0.983145
Target:  5'- gGUCGGcgacguggUGGCCGGgcagccgcucCCCAACUGGCc- -3'
miRNA:   3'- -CAGCCua------ACUGGCU----------GGGUUGACUGcg -5'
9388 5' -52.9 NC_002512.2 + 172405 0.74 0.772466
Target:  5'- -cCGGGaUGACCG-CCCGGCUGGaGCa -3'
miRNA:   3'- caGCCUaACUGGCuGGGUUGACUgCG- -5'
9388 5' -52.9 NC_002512.2 + 184391 0.69 0.96233
Target:  5'- uUCGGcgUGGCCGcCgCCGGggGGCGCu -3'
miRNA:   3'- cAGCCuaACUGGCuG-GGUUgaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 188410 0.66 0.99075
Target:  5'- -cCGGAUcaUGACCGACCacgaGACcGuCGUc -3'
miRNA:   3'- caGCCUA--ACUGGCUGGg---UUGaCuGCG- -5'
9388 5' -52.9 NC_002512.2 + 190535 0.66 0.994625
Target:  5'- gGUCGGGgcgaggGACCGGCU--GCUGG-GCa -3'
miRNA:   3'- -CAGCCUaa----CUGGCUGGguUGACUgCG- -5'
9388 5' -52.9 NC_002512.2 + 191532 0.67 0.9895
Target:  5'- cGUgGGGUcGGgCGACCCGGCgGAucccCGCg -3'
miRNA:   3'- -CAgCCUAaCUgGCUGGGUUGaCU----GCG- -5'
9388 5' -52.9 NC_002512.2 + 192010 0.68 0.968687
Target:  5'- -gCGGAa-GACCGuCCUGGCgGGCGCg -3'
miRNA:   3'- caGCCUaaCUGGCuGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 192582 0.75 0.715174
Target:  5'- cUCGGAgcgGACCGuCCCGcuGCUGcgGCGCg -3'
miRNA:   3'- cAGCCUaa-CUGGCuGGGU--UGAC--UGCG- -5'
9388 5' -52.9 NC_002512.2 + 192843 0.67 0.984954
Target:  5'- -aCGaGGUUGACggagCGACCCGAgUGACa- -3'
miRNA:   3'- caGC-CUAACUG----GCUGGGUUgACUGcg -5'
9388 5' -52.9 NC_002512.2 + 196360 0.7 0.942664
Target:  5'- gGUCGGAggcuccGCCGGCCgGGCUcacuucggGACGCc -3'
miRNA:   3'- -CAGCCUaac---UGGCUGGgUUGA--------CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 200645 0.67 0.984954
Target:  5'- cGUCGGAggacgGACugcgCGACCCGcgGCcGGCGUu -3'
miRNA:   3'- -CAGCCUaa---CUG----GCUGGGU--UGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 204577 0.67 0.984954
Target:  5'- -cCGGug-GGgCGACCCGACUGGgGa -3'
miRNA:   3'- caGCCuaaCUgGCUGGGUUGACUgCg -5'
9388 5' -52.9 NC_002512.2 + 207435 0.67 0.988123
Target:  5'- -aCGGAgaucUGGCCGuaguaGCCCAGCgGAUGg -3'
miRNA:   3'- caGCCUa---ACUGGC-----UGGGUUGaCUGCg -5'
9388 5' -52.9 NC_002512.2 + 208462 0.72 0.886192
Target:  5'- cGUCGGGaUGGCgGACUaCGAC-GACGCg -3'
miRNA:   3'- -CAGCCUaACUGgCUGG-GUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 210444 0.67 0.988123
Target:  5'- cGUCGGg--GACUgGACCCGug-GAUGCg -3'
miRNA:   3'- -CAGCCuaaCUGG-CUGGGUugaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 212439 0.7 0.938055
Target:  5'- uUCGGGccGGCCGGCCgCGACcGcCGCg -3'
miRNA:   3'- cAGCCUaaCUGGCUGG-GUUGaCuGCG- -5'
9388 5' -52.9 NC_002512.2 + 213392 0.66 0.994625
Target:  5'- cGUCGGu----CCGGCCCccGCUG-CGCc -3'
miRNA:   3'- -CAGCCuaacuGGCUGGGu-UGACuGCG- -5'
9388 5' -52.9 NC_002512.2 + 213724 0.74 0.790684
Target:  5'- cGUCGGAgcugacgacgUUGACCGACCgGGCgcagGcCGCc -3'
miRNA:   3'- -CAGCCU----------AACUGGCUGGgUUGa---CuGCG- -5'
9388 5' -52.9 NC_002512.2 + 214972 0.7 0.928143
Target:  5'- -cCGGAUccaGACCGACgCCGACcucggGAUGCc -3'
miRNA:   3'- caGCCUAa--CUGGCUG-GGUUGa----CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 219332 0.67 0.984954
Target:  5'- cGUCGGcgUGGCCcgccggcuGCCCGGCgucCGCg -3'
miRNA:   3'- -CAGCCuaACUGGc-------UGGGUUGacuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.