miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9388 5' -52.9 NC_002512.2 + 225565 0.66 0.99075
Target:  5'- uUCGGcgacgaGGCCGACCuCGAggGGCGCc -3'
miRNA:   3'- cAGCCuaa---CUGGCUGG-GUUgaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 225424 0.75 0.763171
Target:  5'- gGUCGGGUUGggGCCGACgCCGACccccGCGCc -3'
miRNA:   3'- -CAGCCUAAC--UGGCUG-GGUUGac--UGCG- -5'
9388 5' -52.9 NC_002512.2 + 224376 0.67 0.986611
Target:  5'- cUCGGuccggGACCucgcGAcCCCGGCgcgGACGCg -3'
miRNA:   3'- cAGCCuaa--CUGG----CU-GGGUUGa--CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 224109 0.66 0.991879
Target:  5'- uGUCGGucguggUGACCaucucggccgugGACCCGcgccgggagGCgGACGCg -3'
miRNA:   3'- -CAGCCua----ACUGG------------CUGGGU---------UGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 223188 0.69 0.958837
Target:  5'- -gUGGAcgGGCCG-CCCGACgggGACGg -3'
miRNA:   3'- caGCCUaaCUGGCuGGGUUGa--CUGCg -5'
9388 5' -52.9 NC_002512.2 + 221242 0.66 0.993809
Target:  5'- gGUC-GAUcGGCCGGCCgCGGCggaagucggggGACGCg -3'
miRNA:   3'- -CAGcCUAaCUGGCUGG-GUUGa----------CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 220944 0.7 0.938055
Target:  5'- cGUCGGAacGcgcucuucaucGCCGACCCGGCcGAgGCc -3'
miRNA:   3'- -CAGCCUaaC-----------UGGCUGGGUUGaCUgCG- -5'
9388 5' -52.9 NC_002512.2 + 219838 0.71 0.899314
Target:  5'- gGUCGGGggGuCCGGCCCGgggGCgGAuCGCg -3'
miRNA:   3'- -CAGCCUaaCuGGCUGGGU---UGaCU-GCG- -5'
9388 5' -52.9 NC_002512.2 + 219332 0.67 0.984954
Target:  5'- cGUCGGcgUGGCCcgccggcuGCCCGGCgucCGCg -3'
miRNA:   3'- -CAGCCuaACUGGc-------UGGGUUGacuGCG- -5'
9388 5' -52.9 NC_002512.2 + 214972 0.7 0.928143
Target:  5'- -cCGGAUccaGACCGACgCCGACcucggGAUGCc -3'
miRNA:   3'- caGCCUAa--CUGGCUG-GGUUGa----CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 213724 0.74 0.790684
Target:  5'- cGUCGGAgcugacgacgUUGACCGACCgGGCgcagGcCGCc -3'
miRNA:   3'- -CAGCCU----------AACUGGCUGGgUUGa---CuGCG- -5'
9388 5' -52.9 NC_002512.2 + 213392 0.66 0.994625
Target:  5'- cGUCGGu----CCGGCCCccGCUG-CGCc -3'
miRNA:   3'- -CAGCCuaacuGGCUGGGu-UGACuGCG- -5'
9388 5' -52.9 NC_002512.2 + 212439 0.7 0.938055
Target:  5'- uUCGGGccGGCCGGCCgCGACcGcCGCg -3'
miRNA:   3'- cAGCCUaaCUGGCUGG-GUUGaCuGCG- -5'
9388 5' -52.9 NC_002512.2 + 210444 0.67 0.988123
Target:  5'- cGUCGGg--GACUgGACCCGug-GAUGCg -3'
miRNA:   3'- -CAGCCuaaCUGG-CUGGGUugaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 208462 0.72 0.886192
Target:  5'- cGUCGGGaUGGCgGACUaCGAC-GACGCg -3'
miRNA:   3'- -CAGCCUaACUGgCUGG-GUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 207435 0.67 0.988123
Target:  5'- -aCGGAgaucUGGCCGuaguaGCCCAGCgGAUGg -3'
miRNA:   3'- caGCCUa---ACUGGC-----UGGGUUGaCUGCg -5'
9388 5' -52.9 NC_002512.2 + 204577 0.67 0.984954
Target:  5'- -cCGGug-GGgCGACCCGACUGGgGa -3'
miRNA:   3'- caGCCuaaCUgGCUGGGUUGACUgCg -5'
9388 5' -52.9 NC_002512.2 + 200645 0.67 0.984954
Target:  5'- cGUCGGAggacgGACugcgCGACCCGcgGCcGGCGUu -3'
miRNA:   3'- -CAGCCUaa---CUG----GCUGGGU--UGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 196360 0.7 0.942664
Target:  5'- gGUCGGAggcuccGCCGGCCgGGCUcacuucggGACGCc -3'
miRNA:   3'- -CAGCCUaac---UGGCUGGgUUGA--------CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 192843 0.67 0.984954
Target:  5'- -aCGaGGUUGACggagCGACCCGAgUGACa- -3'
miRNA:   3'- caGC-CUAACUG----GCUGGGUUgACUGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.