miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9430 3' -63.1 NC_002531.1 + 38123 1.1 0.000393
Target:  5'- cGGGCAGCCCAGCGCACCCAGGGACUCu -3'
miRNA:   3'- -CCCGUCGGGUCGCGUGGGUCCCUGAG- -5'
9430 3' -63.1 NC_002531.1 + 118419 0.71 0.256343
Target:  5'- gGGGCcugaaggagauAGCCCAGaUGgG-CCAGGGGCUCa -3'
miRNA:   3'- -CCCG-----------UCGGGUC-GCgUgGGUCCCUGAG- -5'
9430 3' -63.1 NC_002531.1 + 35512 0.71 0.262354
Target:  5'- gGGGCugaagccaGGUCCGGCagacacauaGCGCCCcaagauguccAGGGACUCg -3'
miRNA:   3'- -CCCG--------UCGGGUCG---------CGUGGG----------UCCCUGAG- -5'
9430 3' -63.1 NC_002531.1 + 35801 0.71 0.281076
Target:  5'- aGGGCAGCCaCAGCugcgaGCGCCCGGc--CUCu -3'
miRNA:   3'- -CCCGUCGG-GUCG-----CGUGGGUCccuGAG- -5'
9430 3' -63.1 NC_002531.1 + 130178 0.7 0.314608
Target:  5'- gGGGCGGCCgGGgGaggUCCGGGGGCa- -3'
miRNA:   3'- -CCCGUCGGgUCgCgu-GGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114379 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114408 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114466 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114495 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114524 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114553 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114350 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114321 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114292 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114263 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114234 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114176 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114147 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114118 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114060 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.