Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9430 | 3' | -63.1 | NC_002531.1 | + | 114582 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114350 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114379 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114408 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114437 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114466 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114495 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114524 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114553 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114321 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114292 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114263 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114031 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114060 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114089 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114118 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114147 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114176 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114205 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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9430 | 3' | -63.1 | NC_002531.1 | + | 114234 | 0.68 | 0.398662 |
Target: 5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3' miRNA: 3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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