miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9434 5' -48.9 NC_002531.1 + 130123 0.66 0.997646
Target:  5'- cUugCUGGuGCCAUuUGGCaagGCAUagaCCCCa -3'
miRNA:   3'- -AugGAUCuUGGUAuAUCG---UGUA---GGGG- -5'
9434 5' -48.9 NC_002531.1 + 119307 0.66 0.997187
Target:  5'- cACCUGG-GCCAUcugGGC-UAUCUCCu -3'
miRNA:   3'- aUGGAUCuUGGUAua-UCGuGUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 43450 0.66 0.997187
Target:  5'- -gUCUAGAACCcUGU-GCAUggCCCUg -3'
miRNA:   3'- auGGAUCUUGGuAUAuCGUGuaGGGG- -5'
9434 5' -48.9 NC_002531.1 + 129599 0.66 0.996657
Target:  5'- gGCCUaaggagaaGGGGCCcaaaGGCAaGUCCCCa -3'
miRNA:   3'- aUGGA--------UCUUGGuauaUCGUgUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 129682 0.66 0.996657
Target:  5'- gGCCUaaagauaaGGGGCCcaaaGGCAaGUCCCCa -3'
miRNA:   3'- aUGGA--------UCUUGGuauaUCGUgUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 19884 0.66 0.996047
Target:  5'- -uCUUGGAugC-UAUGGCAguUUCCCa -3'
miRNA:   3'- auGGAUCUugGuAUAUCGUguAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 74592 0.66 0.996047
Target:  5'- gGCCUucGAGCCuu-UAGCGCcaucuaCCCCu -3'
miRNA:   3'- aUGGAu-CUUGGuauAUCGUGua----GGGG- -5'
9434 5' -48.9 NC_002531.1 + 105097 0.66 0.995349
Target:  5'- aUACCUGacACCccaguUGGCAguUCCCCc -3'
miRNA:   3'- -AUGGAUcuUGGuau--AUCGUguAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 34414 0.66 0.995121
Target:  5'- aACCUGu-ACCAUGUuauaucuuccaaacGGCaacagugcggggGCAUCCCCg -3'
miRNA:   3'- aUGGAUcuUGGUAUA--------------UCG------------UGUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 60878 0.67 0.993651
Target:  5'- cACCUGGGugUGUGUGcuuGCAagaGUCUCCu -3'
miRNA:   3'- aUGGAUCUugGUAUAU---CGUg--UAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 103109 0.67 0.993358
Target:  5'- uUGCagaUAGGGCCucccucGUAGCACcacgcccuccauucAUCCCCa -3'
miRNA:   3'- -AUGg--AUCUUGGua----UAUCGUG--------------UAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 46458 0.67 0.992632
Target:  5'- cUGCCUGGGAgUGgcUAGCGCcUCCgCCu -3'
miRNA:   3'- -AUGGAUCUUgGUauAUCGUGuAGG-GG- -5'
9434 5' -48.9 NC_002531.1 + 89661 0.67 0.991488
Target:  5'- -uUCUGGAAaCAg--GGcCACGUCCCCa -3'
miRNA:   3'- auGGAUCUUgGUauaUC-GUGUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 115660 0.67 0.990207
Target:  5'- gGgCUGGcuGGCUAgGUGGCcCGUCCCCg -3'
miRNA:   3'- aUgGAUC--UUGGUaUAUCGuGUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 76691 0.67 0.990207
Target:  5'- --aUUAGGGCCAUGUA-CAUAcCCCCa -3'
miRNA:   3'- augGAUCUUGGUAUAUcGUGUaGGGG- -5'
9434 5' -48.9 NC_002531.1 + 4651 0.67 0.990207
Target:  5'- cAUgaAGAACCAUc-AGCAUGUUCCCa -3'
miRNA:   3'- aUGgaUCUUGGUAuaUCGUGUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 75418 0.67 0.990207
Target:  5'- aGCCUGGAAagggaCAggaGUAGUagugGCAUCCCa -3'
miRNA:   3'- aUGGAUCUUg----GUa--UAUCG----UGUAGGGg -5'
9434 5' -48.9 NC_002531.1 + 8361 0.68 0.98878
Target:  5'- gGCUgcuGGGCUAUGUGGC-CAUUUCCa -3'
miRNA:   3'- aUGGau-CUUGGUAUAUCGuGUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 8083 0.68 0.98878
Target:  5'- -uCCUAGGAUauggaaAGgGCAUCCCCa -3'
miRNA:   3'- auGGAUCUUGguaua-UCgUGUAGGGG- -5'
9434 5' -48.9 NC_002531.1 + 80691 0.68 0.981405
Target:  5'- gGCCUGGcAGCCAag-GGCcucaGCAUCaCCCc -3'
miRNA:   3'- aUGGAUC-UUGGUauaUCG----UGUAG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.