miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9442 3' -56.3 NC_002531.1 + 69475 1.11 0.001495
Target:  5'- aGACCACGCCAUGCCAACUACACCCCCu -3'
miRNA:   3'- -CUGGUGCGGUACGGUUGAUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 78472 0.77 0.287923
Target:  5'- -cCCACGCCA-GCUaAACUcuccACACCCCCa -3'
miRNA:   3'- cuGGUGCGGUaCGG-UUGA----UGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 80690 0.66 0.864027
Target:  5'- cGGCCugGCa--GCCAaggGCcucagcauCACCCCCu -3'
miRNA:   3'- -CUGGugCGguaCGGU---UGau------GUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 82080 0.71 0.596762
Target:  5'- cACCucaGCGCagcGCCccuCUGCACCCCCg -3'
miRNA:   3'- cUGG---UGCGguaCGGuu-GAUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 84808 0.66 0.871546
Target:  5'- aGACCACaGCCuuacucUGCCcgaagGACaGCGCCgCCa -3'
miRNA:   3'- -CUGGUG-CGGu-----ACGG-----UUGaUGUGGgGG- -5'
9442 3' -56.3 NC_002531.1 + 86460 0.66 0.848357
Target:  5'- -uCCugGCCAuggcUGCUGGgUGCAUCgCCCu -3'
miRNA:   3'- cuGGugCGGU----ACGGUUgAUGUGG-GGG- -5'
9442 3' -56.3 NC_002531.1 + 87238 0.74 0.439687
Target:  5'- cACC-C-CCAaGCCGACUGCACCaCCCa -3'
miRNA:   3'- cUGGuGcGGUaCGGUUGAUGUGG-GGG- -5'
9442 3' -56.3 NC_002531.1 + 87518 0.74 0.404085
Target:  5'- uGACCACaGCCGUGCaguccACUaauACugCCCCa -3'
miRNA:   3'- -CUGGUG-CGGUACGgu---UGA---UGugGGGG- -5'
9442 3' -56.3 NC_002531.1 + 89584 0.67 0.805808
Target:  5'- aGCCGCGCCcuaGCUAGCUGCuuCUCg -3'
miRNA:   3'- cUGGUGCGGua-CGGUUGAUGugGGGg -5'
9442 3' -56.3 NC_002531.1 + 96721 0.68 0.75636
Target:  5'- aGCCACGCCuucccuaaagucuggGCagguaAACUACACCUCa -3'
miRNA:   3'- cUGGUGCGGua-------------CGg----UUGAUGUGGGGg -5'
9442 3' -56.3 NC_002531.1 + 102607 0.67 0.831885
Target:  5'- gGACCGC-CCAgagagGCCuaaagaUGgGCCCCCu -3'
miRNA:   3'- -CUGGUGcGGUa----CGGuug---AUgUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 103133 0.66 0.871546
Target:  5'- cACCACGCCcu-CCAuu--CAUCCCCa -3'
miRNA:   3'- cUGGUGCGGuacGGUugauGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 107468 0.67 0.805808
Target:  5'- uACCACacagggcCCAUGCCuGCU-CAgCCCCg -3'
miRNA:   3'- cUGGUGc------GGUACGGuUGAuGUgGGGG- -5'
9442 3' -56.3 NC_002531.1 + 115684 0.69 0.699713
Target:  5'- gGGCCACcuaGCCA-GCCAGCccggggacgggGCcaGCCCCCa -3'
miRNA:   3'- -CUGGUG---CGGUaCGGUUGa----------UG--UGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 121442 0.66 0.871546
Target:  5'- cACCugGCCAcGCUGAU-AgACCCCa -3'
miRNA:   3'- cUGGugCGGUaCGGUUGaUgUGGGGg -5'
9442 3' -56.3 NC_002531.1 + 121844 0.73 0.458145
Target:  5'- -cCCACGCCAuUGCCuauGGCUAgGCCUCUg -3'
miRNA:   3'- cuGGUGCGGU-ACGG---UUGAUgUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 122434 0.66 0.848357
Target:  5'- cGCCACGCag-GCCAcg-AgGCCUCCg -3'
miRNA:   3'- cUGGUGCGguaCGGUugaUgUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 122529 0.71 0.576236
Target:  5'- uGACCGUGCCAgaggGCCuuC-ACGCCCUCg -3'
miRNA:   3'- -CUGGUGCGGUa---CGGuuGaUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 123210 0.7 0.672115
Target:  5'- cACCAgGCCAuUGCCAcaucugucuauguGCUGCACCacaaaggccuuugagCCCa -3'
miRNA:   3'- cUGGUgCGGU-ACGGU-------------UGAUGUGG---------------GGG- -5'
9442 3' -56.3 NC_002531.1 + 129383 0.67 0.831885
Target:  5'- aGCCA--CCAUGCC--CUACACCCUUa -3'
miRNA:   3'- cUGGUgcGGUACGGuuGAUGUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.